From c1eebb7bf51c99bce37d43fa2e8ab2cb9c577626 Mon Sep 17 00:00:00 2001 From: montgomerymt-NIH Date: Mon, 28 Oct 2024 17:00:22 -0400 Subject: [PATCH] Update README.md updated links to vertexai.md to the current version for instances instead of user managed notebooks --- GoogleCloud/README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/GoogleCloud/README.md b/GoogleCloud/README.md index 4c13547..23dbc3e 100644 --- a/GoogleCloud/README.md +++ b/GoogleCloud/README.md @@ -57,7 +57,7 @@ Included is a tutorial in the form of Jupyter notebooks. The main purpose of the **1)** Please click on the link for steps to open your GCP project: [How to open your GCP Project](https://github.com/STRIDES/NIHCloudLabGCP/blob/main/docs/open_project_intramural.md). -**2)** Follow the steps highlighted [here](https://github.com/STRIDES/NIHCloudLabGCP/blob/main/docs/vertexai.md) to create a new instance notebook in Vertex AI. Follow steps 1-8 and be especially careful to enable idle shutdown as highlighted in [step 7](https://github.com/STRIDES/NIHCloudLabGCP/blob/main/docs/vertexai.md#:~:text=On%20the%20same%20page%2C%20click%20Enable%20Idle%20Shutdown%20and%20specify%20the%20idle%20minutes%20for%20shutdown.%20This%20means%2C%20if%20you%20close%20your%20browser%20and%20walk%20away%20without%20stopping%20your%20instance%2C%20it%20will%20shutdown%20automatically%20after%20this%20many%20minutes.%20We%20recommend%2030%20minutes.). For this module you should select Debian 11 and Python 3 in the Environment tab in [step 5](https://github.com/STRIDES/NIHCloudLabGCP/blob/main/docs/vertexai.md#:~:text=On%20the%20Environment%20tab%2C). In [step 6](https://github.com/STRIDES/NIHCloudLabGCP/blob/main/docs/vertexai.md#:~:text=GPU%20use.-,Under%20Machine%20type,-select%20your%20desired) in the Machine type tab, select n1-standard-4 from the dropdown box. +**2)** Follow the steps highlighted [here](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateVertexAINotebooks.md) to create a new instance notebook in Vertex AI. Follow steps 1-8 and be especially careful to enable idle shutdown as highlighted in [step 8](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateVertexAINotebooks.md#:~:text=On%20the%20same%20screen%2C%20verify%20that%20Enable%20Idle%20Shutdown%20is%20selected%20and%20specify%20the%20idle%20minutes%20for%20shutdown.%20This%20means%20it%20will%20shutdown%20automatically%20after%20this%20many%20minutes.%20We%20recommend%2030%20minutes.). For this module you should select Debian 11 and Python 3 in the Environment tab in [step 6](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateVertexAINotebooks.md#:~:text=On%20the%20Environment%20screen). In [step 7](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateVertexAINotebooks.md#:~:text=On%20the%20Machine%20type%20screen) in the Machine type tab, select n1-standard-4 from the dropdown box. **3)** Now you will need to download the tutorial files from GitHub. The easiest way to do this would be to clone the repository from NIGMS into your Vertex AI notebook. This can be done by using the `Git` menu in JupyterLab, and selecting the clone option. To clone this repository, use the Git command `git clone https://github.com/NIGMS/Introduction-to-Data-Science-for-Biology.git` in the dropdown menu option in Jupyter notebook. Please make sure you only enter the link for the repository that you want to clone. There are other bioinformatics related learning modules available in the [NIGMS Repository](https://github.com/NIGMS). This will download our tutorial files into a folder called `Introduction-to-Data-Science-for-Biology`. @@ -65,7 +65,7 @@ Included is a tutorial in the form of Jupyter notebooks. The main purpose of the **IMPORTANT NOTE** -Make sure that after you are done with the module, close the tab that appeared when you clicked **OPEN JUPYTERLAB**, then check the box next to the name of the notebook you created in [step 3](https://github.com/STRIDES/NIHCloudLabGCP/blob/main/docs/vertexai.md#:~:text=Click%20Create%20New-,Select,-Advanced%20Options%20at). Then click on **STOP** at the top of the Workbench menu. Wait and make sure that the icon next to your notebook is grayed out. +Make sure that after you are done with the module, close the tab that appeared when you clicked **OPEN JUPYTERLAB**, then check the box next to the name of the notebook you created in [step 3](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateVertexAINotebooks.md#:~:text=Select%20Advanced%20Options%20at%20the%20bottom%20of%20the%20New%20Instance). Then click on **STOP** at the top of the Workbench menu. Wait and make sure that the icon next to your notebook is grayed out. ## **Software Requirements**