GitHub - NKI-CCB/precision-immune-analyses: Analyses for the PRECISION DCIS immune paper (in press)

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Analyses for the PRECISION DCIS immune paper (in press)

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Name		Name	Last commit message	Last commit date
Latest commit History 27 Commits
data		data
plots		plots
src		src
.gitignore		.gitignore
README		README
Snakefile		Snakefile
renv.lock		renv.lock

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Code supporting our paper
"Comprehensive multiplexed immune proﬁling of the ductal carcinoma in situ immune microenvironment regarding subsequent ipsilateral invasive breast cancer risk"
published in the British Journal of Cancer (2022): https://doi.org/10.1038/s41416-022-01888-2.


Steps to make the plots:
 1. Install R and the required packages. The exact version used are documented in `renv.lock`.
 2. Add the data files from https://doi.org/10.6084/m9.figshare.19698286 to the data directory.
 3. Run with `snakemake`.