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Issues list

[Developer Issue]: Need GitHub actions to turn off FIMS_DEBUG_LOG() status: triage_needed This is not approved for this milestone, do not work on it yet
#681 opened Nov 1, 2024 by kellijohnson-NOAA
[Developer Issue]: add a standalone GHA test for checking the speed of FIMS parallel runs status: triage_needed This is not approved for this milestone, do not work on it yet
#677 opened Oct 18, 2024 by Bai-Li-NOAA
@Bai-Li-NOAA
[Developer Issue]: distributions need to be in fims_math kind: refactor Restructure code to improve the implementation of FIMS P2 mid-level priority theme: code cleanup
#674 opened Oct 8, 2024 by kellijohnson-NOAA
@Andrea-Havron-NOAA
[feature:] Warnings and Notes from R CMD check kind: feature New feature or request status: triage_needed This is not approved for this milestone, do not work on it yet
#671 opened Oct 2, 2024 by arni-magnusson
[Developer Issue]: No link to conventional commits in Reviewer checklist
#667 opened Sep 17, 2024 by kellijohnson-NOAA
[feature:] do we need a get_parameter_names function? kind: feature New feature or request status: triage_needed This is not approved for this milestone, do not work on it yet
#666 opened Aug 29, 2024 by Andrea-Havron-NOAA
[Developer Issue]: convert JSON output to R list following plan in design doc status: triage_needed This is not approved for this milestone, do not work on it yet
#664 opened Aug 23, 2024 by iantaylor-NOAA
@kellijohnson-NOAA
2
[Developer Issue]: M2 Quality control task list kind: refactor Restructure code to improve the implementation of FIMS P3 low priority task theme: code cleanup
#662 opened Aug 7, 2024 by kellijohnson-NOAA Q2
1
[Developer Issue]: Use GHA to create a pull request to modify pull requests attribute: low hanging 🍎 Easy to knock off in less than 1 day kind: feature New feature or request P3 low priority task status: wishlist this will be moved to a later milestone theme: documentation
#660 opened Jul 26, 2024 by Bai-Li-NOAA
@k-doering-NOAA @Bai-Li-NOAA
9
[Developer Issue]: Add Doxygen formulas for functions in the population module status: triage_needed This is not approved for this milestone, do not work on it yet
#659 opened Jul 26, 2024 by Bai-Li-NOAA
15 tasks
@JonBrodziak @Bai-Li-NOAA
[Developer Issue]: actions/checkout@v3 uses deprecated Node.js version attribute: good first issue Good for newcomers attribute: low hanging 🍎 Easy to knock off in less than 1 day kind: refactor Restructure code to improve the implementation of FIMS P3 low priority task theme: code cleanup
#656 opened Jul 25, 2024 by kellijohnson-NOAA Q2
@Bai-Li-NOAA
[Bug:] Inconsistent inputs for evaluate() functions in the recruitment module kind: bug Something isn't working P3 low priority task theme: code cleanup
#653 opened Jul 24, 2024 by Bai-Li-NOAA 2
@msupernaw
3
[Developer Issue]: Relocate and document FIMS folder descriptions status: triage_needed This is not approved for this milestone, do not work on it yet
#650 opened Jul 12, 2024 by Bai-Li-NOAA
2 tasks
2
[Developer Issue]: Investigate the requirements for FIMS reproducibility status: triage_needed This is not approved for this milestone, do not work on it yet
#649 opened Jul 10, 2024 by Bai-Li-NOAA
2 tasks
Q2
3
[Developer Issue]: create a vignette to demonstrate how to run FIMS in parallel kind: documentation Improvements or additions to documentation P3 low priority task theme: documentation theme: R interface
#648 opened Jul 10, 2024 by Bai-Li-NOAA
1 task
Q2
[Bug]: proportion female at age kind: bug Something isn't working kind: documentation Improvements or additions to documentation kind: refactor Restructure code to improve the implementation of FIMS P3 low priority task theme: code cleanup theme: R interface
#638 opened Jun 29, 2024 by KyleShertzer-NOAA 2
@kellijohnson-NOAA
2
[Developer Issue]: Documenting things using Rcpp or C++ kind: documentation Improvements or additions to documentation kind: question Further information is requested P2 mid-level priority status: needs discussion Dialogue is needed before a decision can be made. theme: documentation
#635 opened Jun 19, 2024 by kellijohnson-NOAA Parking lot
1
@Bai-Li-NOAA
[Developer Issue]: FIMS needs an overview document kind: documentation Improvements or additions to documentation theme: documentation
#634 opened Jun 18, 2024 by Bai-Li-NOAA
1 task
2
@kellijohnson-NOAA
[Feature]: Specify input sample size for weight-at-age data kind: feature New feature or request P3 low priority task status: needs discussion Dialogue is needed before a decision can be made. status: wishlist this will be moved to a later milestone theme: NLL refactor Negative log likelihood
#629 opened Jun 13, 2024 by kellijohnson-NOAA Parking lot
1
[Feature]: Allow sdlog (or scalar multiplier) as estimable kind: feature New feature or request P3 low priority task status: wishlist this will be moved to a later milestone theme: NLL refactor Negative log likelihood
#627 opened Jun 13, 2024 by kellijohnson-NOAA Parking lot
1
[Bug]: FIMS runs regardless of the length of the log_obs_error and log_Fmort inputs kind: bug Something isn't working P1 high priority task
#622 opened Jun 6, 2024 by Bai-Li-NOAA 2
@Andrea-Havron-NOAA
2
[Developer Issue]: wrapper function to run a FIMS model kind: feature New feature or request P2 mid-level priority theme: R interface
#621 opened Jun 5, 2024 by kellijohnson-NOAA
8 tasks
2
@Cole-Monnahan-NOAA @Bai-Li-NOAA
2
[Feature]: calculate model start/end time, model call, and version of FIMS kind: feature New feature or request theme: R interface
#617 opened May 31, 2024 by k-doering-NOAA 2
@Cole-Monnahan-NOAA @Bai-Li-NOAA
7
[Developer Issue]: Add enum for nll_type kind: feature New feature or request theme: NLL refactor Negative log likelihood
#613 opened May 30, 2024 by Andrea-Havron-NOAA
4 tasks
2
@Andrea-Havron-NOAA
[Feature]: estimate initial depletion attribute: case study features Needed for a case study to match a production assessment
#600 opened May 20, 2024 by ChristineStawitz-NOAA Parking lot
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