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enkf_run.sh
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#!/bin/sh
export nprocs=`expr $cores \/ $enkf_threads`
export mpitaskspernode=`expr $corespernode \/ $enkf_threads`
export OMP_NUM_THREADS=$enkf_threads
export OMP_STACKSIZE=512M
export MKL_NUM_THREADS=1
nfhr=$nhr_anal
charfhr="fhr"`printf %02i $nfhr`
# check output files.
nanal=1
filemissing='no'
while [ $nanal -le $nanals ]; do
charnanal="mem"`printf %03i $nanal`
analfile="${datapath2}/sanl_${analdate}_${charfhr}_${charnanal}"
if [ ! -s $analfile ]; then
filemissing='yes'
fi
nanal=$((nanal+1))
done
if [ $filemissing == 'yes' ]; then
echo "computing enkf update..."
date
cd ${datapath2}
cat <<EOF > enkf.nml
&nam_enkf
datestring="$analdate",datapath="$datapath2",univaroz=.false.,numiter=0,
analpertwtnh=$analpertwtnh,analpertwtsh=$analpertwtsh,analpertwttr=$analpertwttr,
analpertwtnh_rtpp=$analpertwtnh_rtpp,analpertwtsh_rtpp=$analpertwtsh_rtpp,analpertwttr_rtpp=$analpertwttr_rtpp,
covinflatemax=$covinflatemax,covinflatemin=$covinflatemin,pseudo_rh=$pseudo_rh,
corrlengthnh=$corrlengthnh,corrlengthsh=$corrlengthsh,corrlengthtr=$corrlengthtr,
lnsigcutoffnh=$lnsigcutoffnh,lnsigcutoffsh=$lnsigcutoffsh,lnsigcutofftr=$lnsigcutofftr,
lnsigcutoffsatnh=$lnsigcutoffsatnh,lnsigcutoffsatsh=$lnsigcutoffsatsh,lnsigcutoffsattr=$lnsigcutoffsattr,
lnsigcutoffpsnh=$lnsigcutoffpsnh,lnsigcutoffpssh=$lnsigcutoffpssh,lnsigcutoffpstr=$lnsigcutoffpstr,
nlons=$LONA,nlats=$LATA,smoothparm=$SMOOTHINF,letkf_bruteforce_search=${letkf_bruteforce_search},
readin_localization=$readin_localization,saterrfact=$saterrfact,
paoverpb_thresh=$paoverpb_thresh,letkf_flag=$letkf_flag,denkf=$denkf,
getkf_inflation=$getkf_inflation,letkf_novlocal=$letkf_novlocal,modelspace_vloc=$modelspace_vloc,save_inflation=.false.,
reducedgrid=${reducedgrid},nlevs=$LEVS,nanals=$nanals,deterministic=$deterministic,imp_physics=$imp_physics,
lobsdiag_forenkf=.true.,write_spread_diag=.false.,netcdf_diag=.true.,mincorrlength_fact=$mincorrlength_fact,
sortinc=$sortinc,nhr_anal=$nhr_anal,nhr_state=$enkfstatefhrs,getkf=$getkf,taperanalperts=${taperanalperts},
use_correlated_oberrs=${use_correlated_oberrs},use_gfs_ncio=.true.,nccompress=T,paranc=F,write_fv3_incr=${write_fv3_increment},
adp_anglebc=.true.,angord=4,newpc4pred=.true.,use_edges=.false.,emiss_bc=.true.,biasvar=-500,nobsl_max=$nobsl_max,
${ENKFVARS}
${WRITE_INCR_ZERO}
/
&satobs_enkf
sattypes_rad(1) = 'amsua_n15', dsis(1) = 'amsua_n15',
sattypes_rad(2) = 'amsua_n18', dsis(2) = 'amsua_n18',
sattypes_rad(3) = 'amsua_n19', dsis(3) = 'amsua_n19',
sattypes_rad(4) = 'amsub_n16', dsis(4) = 'amsub_n16',
sattypes_rad(5) = 'amsub_n17', dsis(5) = 'amsub_n17',
sattypes_rad(6) = 'amsua_aqua', dsis(6) = 'amsua_aqua',
sattypes_rad(7) = 'amsua_metop-a', dsis(7) = 'amsua_metop-a',
sattypes_rad(8) = 'airs_aqua', dsis(8) = 'airs281SUBSET_aqua',
sattypes_rad(9) = 'hirs3_n17', dsis(9) = 'hirs3_n17',
sattypes_rad(10)= 'hirs4_n19', dsis(10)= 'hirs4_n19',
sattypes_rad(11)= 'hirs4_metop-a', dsis(11)= 'hirs4_metop-a',
sattypes_rad(12)= 'mhs_n18', dsis(12)= 'mhs_n18',
sattypes_rad(13)= 'mhs_n19', dsis(13)= 'mhs_n19',
sattypes_rad(14)= 'mhs_metop-a', dsis(14)= 'mhs_metop-a',
sattypes_rad(15)= 'goes_img_g11', dsis(15)= 'imgr_g11',
sattypes_rad(16)= 'goes_img_g12', dsis(16)= 'imgr_g12',
sattypes_rad(17)= 'goes_img_g13', dsis(17)= 'imgr_g13',
sattypes_rad(18)= 'goes_img_g14', dsis(18)= 'imgr_g14',
sattypes_rad(19)= 'goes_img_g15', dsis(19)= 'imgr_g15',
sattypes_rad(20)= 'avhrr_n18', dsis(20)= 'avhrr3_n18',
sattypes_rad(21)= 'avhrr_metop-a', dsis(21)= 'avhrr3_metop-a',
sattypes_rad(22)= 'avhrr_n19', dsis(22)= 'avhrr3_n19',
sattypes_rad(23)= 'amsre_aqua', dsis(23)= 'amsre_aqua',
sattypes_rad(24)= 'ssmis_f16', dsis(24)= 'ssmis_f16',
sattypes_rad(25)= 'ssmis_f17', dsis(25)= 'ssmis_f17',
sattypes_rad(26)= 'ssmis_f18', dsis(26)= 'ssmis_f18',
sattypes_rad(27)= 'ssmis_f19', dsis(27)= 'ssmis_f19',
sattypes_rad(28)= 'ssmis_f20', dsis(28)= 'ssmis_f20',
sattypes_rad(29)= 'sndrd1_g11', dsis(29)= 'sndrD1_g11',
sattypes_rad(30)= 'sndrd2_g11', dsis(30)= 'sndrD2_g11',
sattypes_rad(31)= 'sndrd3_g11', dsis(31)= 'sndrD3_g11',
sattypes_rad(32)= 'sndrd4_g11', dsis(32)= 'sndrD4_g11',
sattypes_rad(33)= 'sndrd1_g12', dsis(33)= 'sndrD1_g12',
sattypes_rad(34)= 'sndrd2_g12', dsis(34)= 'sndrD2_g12',
sattypes_rad(35)= 'sndrd3_g12', dsis(35)= 'sndrD3_g12',
sattypes_rad(36)= 'sndrd4_g12', dsis(36)= 'sndrD4_g12',
sattypes_rad(37)= 'sndrd1_g13', dsis(37)= 'sndrD1_g13',
sattypes_rad(38)= 'sndrd2_g13', dsis(38)= 'sndrD2_g13',
sattypes_rad(39)= 'sndrd3_g13', dsis(39)= 'sndrD3_g13',
sattypes_rad(40)= 'sndrd4_g13', dsis(40)= 'sndrD4_g13',
sattypes_rad(41)= 'sndrd1_g14', dsis(41)= 'sndrD1_g14',
sattypes_rad(42)= 'sndrd2_g14', dsis(42)= 'sndrD2_g14',
sattypes_rad(43)= 'sndrd3_g14', dsis(43)= 'sndrD3_g14',
sattypes_rad(44)= 'sndrd4_g14', dsis(44)= 'sndrD4_g14',
sattypes_rad(45)= 'sndrd1_g15', dsis(45)= 'sndrD1_g15',
sattypes_rad(46)= 'sndrd2_g15', dsis(46)= 'sndrD2_g15',
sattypes_rad(47)= 'sndrd3_g15', dsis(47)= 'sndrD3_g15',
sattypes_rad(48)= 'sndrd4_g15', dsis(48)= 'sndrD4_g15',
sattypes_rad(49)= 'iasi_metop-a', dsis(49)= 'iasi616_metop-a',
sattypes_rad(50)= 'seviri_m08', dsis(50)= 'seviri_m08',
sattypes_rad(51)= 'seviri_m09', dsis(51)= 'seviri_m09',
sattypes_rad(52)= 'seviri_m10', dsis(52)= 'seviri_m10',
sattypes_rad(53)= 'amsua_metop-b', dsis(53)= 'amsua_metop-b',
sattypes_rad(54)= 'hirs4_metop-b', dsis(54)= 'hirs4_metop-b',
sattypes_rad(55)= 'mhs_metop-b', dsis(55)= 'mhs_metop-b',
sattypes_rad(56)= 'iasi_metop-b', dsis(56)= 'iasi616_metop-b',
sattypes_rad(57)= 'avhrr_metop-b', dsis(57)= 'avhrr3_metop-b',
sattypes_rad(58)= 'atms_npp', dsis(58)= 'atms_npp',
sattypes_rad(59)= 'cris_npp', dsis(59)= 'cris_npp',
sattypes_rad(60)= 'msu_n14', dsis(60)= 'msu_n14',
sattypes_rad(61)= 'hirs2_n14', dsis(61)= 'hirs2_n14',
sattypes_rad(62)= 'hirs3_n15', dsis(62)= 'hirs3_n15',
sattypes_rad(63)= 'hirs3_n16', dsis(63)= 'hirs3_n16',
sattypes_rad(64)= 'ssu_n14', dsis(64)= 'ssu_n14',
sattypes_rad(65)= 'sndr_g08', dsis(65)= 'sndr_g08',
sattypes_rad(66)= 'sndr_g09', dsis(66)= 'sndr_g09',
sattypes_rad(67)= 'sndr_g10', dsis(67)= 'sndr_g10',
sattypes_rad(68)= 'sndr_g11', dsis(68)= 'sndr_g11',
sattypes_rad(69)= 'sndr_g12', dsis(69)= 'sndr_g12',
sattypes_rad(70)= 'avhrr_n14', dsis(70)= 'avhrr3_n14',
sattypes_rad(71)= 'avhrr_n15', dsis(71)= 'avhrr3_n15',
sattypes_rad(72)= 'avhrr_n16', dsis(72)= 'avhrr3_n16',
sattypes_rad(73)= 'avhrr_n17', dsis(73)= 'avhrr3_n17',
sattypes_rad(74)= 'amsua_n16', dsis(74)= 'amsua_n16'
sattypes_rad(75)= 'amsub_n15', dsis(75)= 'amsub_n15',
sattypes_rad(76)= 'avhrr_n14', dsis(76)= 'avhrr2_n14',
sattypes_rad(77)= 'atms_n20', dsis(77)= 'atms_n20',
sattypes_rad(78)= 'cris-fsr_npp', dsis(78)= 'cris-fsr_npp',
sattypes_rad(79)= 'cris-fsr_n20', dsis(79)= 'cris-fsr_n20',
sattypes_rad(80)= 'gmi_gpm', dsis(80)= 'gmi_gpm',
sattypes_rad(81)= 'saphir_meghat', dsis(81)= 'saphir_meghat',
sattypes_rad(82)= 'amsua_metop-c', dsis(82)= 'amsua_metop-c',
sattypes_rad(83)= 'mhs_metop-c', dsis(83)= 'mhs_metop-c',
sattypes_rad(84)= 'iasi_metop-c', dsis(84)= 'iasi_metop-c',
sattypes_rad(85)= 'ahi_himawari8', dsis(85)= 'ahi_himawari8',
sattypes_rad(86)= 'abi_g16', dsis(86)= 'abi_g16',
sattypes_rad(87)= 'abi_g17', dsis(87)= 'abi_g17',
/
&END
&ozobs_enkf
sattypes_oz(1) = 'sbuv2_n11',
sattypes_oz(2) = 'sbuv2_n14',
sattypes_oz(3) = 'sbuv2_n16',
sattypes_oz(4) = 'sbuv2_n17',
sattypes_oz(5) = 'sbuv2_n18',
sattypes_oz(6) = 'sbuv2_n19',
sattypes_oz(7) = 'omi_aura',
sattypes_oz(8) = 'gome_metop-a',
sattypes_oz(9) = 'gome_metop-b',
sattypes_oz(10) = 'mls30_aura',
sattypes_oz(11) = 'ompsnp_npp',
sattypes_oz(12) = 'ompstc8_npp',
/
&END
EOF
cat enkf.nml
cp ${enkfscripts}/vlocal_eig_L${LEVS}.dat ${datapath2}/vlocal_eig.dat
/bin/rm -f ${datapath2}/enkf.log
/bin/mv -f ${current_logdir}/ensda.out ${current_logdir}/ensda.out.save
export PGM=$enkfbin
echo "OMP_NUM_THREADS = $OMP_NUM_THREADS"
# use same number of tasks on every node.
export nprocs=`expr $cores \/ $OMP_NUM_THREADS`
export mpitaskspernode=`expr $corespernode \/ $OMP_NUM_THREADS`
echo "running with $OMP_NUM_THREADS threads ..."
${enkfscripts}/runmpi > ${current_logdir}/ensda.out 2>&1
if [ ! -s ${datapath2}/enkf.log ]; then
echo "no enkf log file found"
exit 1
fi
else
echo "enkf update already done..."
fi # filemissing='yes'
# check output files again.
nanal=1
filemissing='no'
while [ $nanal -le $nanals ]; do
charnanal="mem"`printf %03i $nanal`
analfile=${datapath2}/sanl_${analdate}_${charfhr}_${charnanal}
if [ ! -s $analfile ]; then
filemissing='yes'
fi
nanal=$((nanal+1))
done
if [ $filemissing == 'yes' ]; then
echo "there are output files missing!"
exit 1
else
echo "all output files seem OK `date`"
fi
exit 0