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@dora-ferreira@justinjjvanderhooft Hi, could you provide the link of example output for each of GNPS2 workflows? With these example data, I could have a look how to support them in NPLinker.
Output files from molecular networks generated by GNPS2 (https://gnps2.org/homepage) are not yet accepted by NPLinker. Support should be added for classic (https://wang-bioinformatics-lab.github.io/GNPS2_Documentation/classical/) and feature-based (https://wang-bioinformatics-lab.github.io/GNPS2_Documentation/fbmn/) molecular networking workflows.
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