First cut of VariantWorks SDK!
Pre-release
Pre-release
Introducing VariantWorks SDK - python framework to simplify the development of deep learning powered variant and consensus calling from reads.
Highlights of first cut
- Encoder - Read pileup encoder with support for read, base quality, mapping quality data, and reference and allele proposal encodings.
- I/O - VCF reader for parsing true and false positive variant samples for training.
- Data Loader - NeMo wrapped data loader implementations for online and offline data loading/encoding.
- Samples - A trainer/evaluator app for simple SNP zygosity calling using a CNN.
More details available at https://clara-parabricks.github.io/VariantWorks/