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Nelson-Gon committed Jan 16, 2021
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15 changes: 6 additions & 9 deletions README.md
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# cytounet: Deep Learning Based Cell Segmentation

[![PyPI version](https://badge.fury.io/py/cytounet.svg)](https://badge.fury.io/py/cytounet)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3928919.svg)](https://doi.org/10.5281/zenodo.3928919)
![Stage](https://www.repostatus.org/badges/latest/active.svg)
[![Documentation Status](https://readthedocs.org/projects/cytounet/badge/?version=latest)](https://cytounet.readthedocs.io/en/latest/?badge=latest)
![Stage](https://www.repostatus.org/badges/latest/active.svg)
![Test Install](https://github.com/Nelson-Gon/cytounet/workflows/Test%20Install/badge.svg)
[![PyPI version](https://badge.fury.io/py/cytounet.svg)](https://badge.fury.io/py/cytounet)
[![PyPI Downloads Month](https://img.shields.io/pypi/dm/cytounet.svg)](https://pypi.python.org/pypi/cytounet/)
[![PyPI license](https://img.shields.io/pypi/l/cytounet.svg)](https://pypi.python.org/pypi/cytounet/)
![Travis Build](https://travis-ci.com/Nelson-Gon/cytounet.svg?branch=master)
[![PyPI license](https://img.shields.io/pypi/l/cytounet.svg)](https://pypi.python.org/pypi/cytounet/)
[![Documentation Status](https://readthedocs.org/projects/cytounet/badge/?version=latest)](https://cytounet.readthedocs.io/en/latest/?badge=latest)
[![PyPI Downloads Month](https://img.shields.io/pypi/dm/cytounet.svg)](https://pypi.python.org/pypi/cytounet/)
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---


**Background**

![Project Workflow](https://github.com/Nelson-Gon/cytounet/blob/master/examples/project_workflow.png?raw=true)

This project was largely done as a summer intern in Dr. Mikael [Bjorklund](https://person.zju.edu.cn/en/H118035)'s lab,
This project was largely done as a summer 2020 intern in Dr. Mikael [Bjorklund](https://person.zju.edu.cn/en/H118035)'s lab,
whose guidance, resources, and time I am grateful for.

The aim was to automate [a549](https://en.wikipedia.org/wiki/A549_cell) and [rpe](https://en.wikipedia.org/wiki/Retinal_pigment_epithelium)
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36 changes: 17 additions & 19 deletions docs/source/README.rst
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===============================================


.. image:: https://badge.fury.io/py/cytounet.svg
:target: https://badge.fury.io/py/cytounet
:alt: PyPI version


.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3928919.svg
:target: https://doi.org/10.5281/zenodo.3928919
:alt: DOI
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.. image:: https://www.repostatus.org/badges/latest/active.svg
:target: https://www.repostatus.org/badges/latest/active.svg
:alt: Stage


.. image:: https://readthedocs.org/projects/cytounet/badge/?version=latest
:target: https://cytounet.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status


.. image:: https://github.com/Nelson-Gon/cytounet/workflows/Test%20Install/badge.svg
:target: https://github.com/Nelson-Gon/cytounet/workflows/Test%20Install/badge.svg
:alt: Test Install


.. image:: https://badge.fury.io/py/cytounet.svg
:target: https://badge.fury.io/py/cytounet
:alt: PyPI version


.. image:: https://img.shields.io/pypi/dm/cytounet.svg
:target: https://pypi.python.org/pypi/cytounet/
:alt: PyPI Downloads Month
.. image:: https://travis-ci.com/Nelson-Gon/cytounet.svg?branch=master
:target: https://travis-ci.com/Nelson-Gon/cytounet.svg?branch=master
:alt: Travis Build


.. image:: https://img.shields.io/pypi/l/cytounet.svg
:target: https://pypi.python.org/pypi/cytounet/
:alt: PyPI license


.. image:: https://travis-ci.com/Nelson-Gon/cytounet.svg?branch=master
:target: https://travis-ci.com/Nelson-Gon/cytounet.svg?branch=master
:alt: Travis Build
.. image:: https://readthedocs.org/projects/cytounet/badge/?version=latest
:target: https://cytounet.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status


.. image:: https://img.shields.io/pypi/dm/cytounet.svg
:target: https://pypi.python.org/pypi/cytounet/
:alt: PyPI Downloads Month


.. image:: https://img.shields.io/badge/Maintained%3F-yes-green.svg
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:alt: GitHub issues-closed


----

**Background**


Expand All @@ -73,7 +71,7 @@ cytounet: Deep Learning Based Cell Segmentation
:alt: Project Workflow


This project was largely done as a summer intern in Dr. Mikael `Bjorklund <https://person.zju.edu.cn/en/H118035>`_\ 's lab,
This project was largely done as a summer 2020 intern in Dr. Mikael `Bjorklund <https://person.zju.edu.cn/en/H118035>`_\ 's lab,
whose guidance, resources, and time I am grateful for.

The aim was to automate `a549 <https://en.wikipedia.org/wiki/A549_cell>`_ and `rpe <https://en.wikipedia.org/wiki/Retinal_pigment_epithelium>`_
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