add a test for testing setup when multiple servers are in the config

.github/workflows/test-cvmfs.yml

@@ -9,6 +9,12 @@ env:
   DOCKERHUB_ORG: ${{ secrets.DOCKERHUB_ORG }}
 
 jobs:
+  test_cvmfs_1_2_3:
+    runs-on: ubuntu-22.04
+    steps:
+    - uses: actions/checkout@v4
+    - name: check if cvmfs setup with multiple entries works
+      run: /bin/bash .github/workflows/test_cvmfs_1_2_3.sh
   test_cvmfs:
     runs-on: ubuntu-22.04
     strategy:
@@ -17,4 +23,4 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: check if ${{ matrix.cvmfs-server }} is online and up-to-date
-      run: /bin/bash .github/workflows/test_cvmfs.sh  ${{ matrix.cvmfs-server }}
+      run: /bin/bash .github/workflows/test_cvmfs.sh  ${{ matrix.cvmfs-server }}

.github/workflows/test_cvmfs_1_2_3.sh

@@ -0,0 +1,79 @@
+# set -e
+
+sudo apt-get install lsb-release
+wget https://ecsft.cern.ch/dist/cvmfs/cvmfs-release/cvmfs-release-latest_all.deb
+
+echo "[DEBUG]: adding cfms repo"
+sudo dpkg -i cvmfs-release-latest_all.deb
+echo "[DEBUG]: apt-get update"
+sudo apt-get update --allow-unauthenticated
+echo "[DEBUG]: apt-get install cvmfs"
+sudo apt-get install cvmfs --allow-unauthenticated
+
+sudo mkdir -p /etc/cvmfs/keys/ardc.edu.au/
+
+
+echo "-----BEGIN PUBLIC KEY-----
+MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAwUPEmxDp217SAtZxaBep
+Bi2TQcLoh5AJ//HSIz68ypjOGFjwExGlHb95Frhu1SpcH5OASbV+jJ60oEBLi3sD
+qA6rGYt9kVi90lWvEjQnhBkPb0uWcp1gNqQAUocybCzHvoiG3fUzAe259CrK09qR
+pX8sZhgK3eHlfx4ycyMiIQeg66AHlgVCJ2fKa6fl1vnh6adJEPULmn6vZnevvUke
+I6U1VcYTKm5dPMrOlY/fGimKlyWvivzVv1laa5TAR2Dt4CfdQncOz+rkXmWjLjkD
+87WMiTgtKybsmMLb2yCGSgLSArlSWhbMA0MaZSzAwE9PJKCCMvTANo5644zc8jBe
+NQIDAQAB
+-----END PUBLIC KEY-----" | sudo tee /etc/cvmfs/keys/ardc.edu.au/neurodesk.ardc.edu.au.pub
+
+
+echo "CVMFS_USE_GEOAPI=yes" | sudo tee /etc/cvmfs/config.d/neurodesk.ardc.edu.au.conf
+
+echo "CVMFS_SERVER_URL=\"http://cvmfs1.neurodesk.org/cvmfs/@fqrn@;http://cvmfs2.neurodesk.org/cvmfs/@fqrn@;http://cvmfs3.neurodesk.org/cvmfs/@fqrn@;\"" | sudo tee -a /etc/cvmfs/config.d/neurodesk.ardc.edu.au.conf
+
+echo 'CVMFS_KEYS_DIR="/etc/cvmfs/keys/ardc.edu.au/"' | sudo tee -a /etc/cvmfs/config.d/neurodesk.ardc.edu.au.conf
+
+echo "CVMFS_HTTP_PROXY=DIRECT" | sudo tee  /etc/cvmfs/default.local
+echo "CVMFS_QUOTA_LIMIT=5000" | sudo tee -a  /etc/cvmfs/default.local
+
+sudo cvmfs_config setup
+# sudo cvmfs_config wsl2_start
+sudo cvmfs_config chksetup
+
+ls /cvmfs/neurodesk.ardc.edu.au
+
+# sudo cvmfs_config umount
+
+cvmfs_config stat -v neurodesk.ardc.edu.au
+
+
+
+## Test if containers are on CVMFS:
+wget https://raw.githubusercontent.com/NeuroDesk/neurocommand/main/cvmfs/log.txt
+echo "debug logfile:"
+cat log.txt
+
+ls /cvmfs/neurodesk.ardc.edu.au
+
+while IFS= read -r LINE
+do
+    echo "[DEBUG] LINE: $LINE"
+    IMAGENAME_BUILDDATE="$(cut -d' ' -f1 <<< ${LINE})"
+    echo "IMAGENAME_BUILDDATE: $IMAGENAME_BUILDDATE"
+
+    IMAGENAME="$(cut -d'_' -f1,2 <<< ${IMAGENAME_BUILDDATE})"
+    BUILDDATE="$(cut -d'_' -f3 <<< ${IMAGENAME_BUILDDATE})"
+    echo "[DEBUG] IMAGENAME: $IMAGENAME"
+    echo "[DEBUG] BUILDDATE: $BUILDDATE"
+
+    if [[ -f "/cvmfs/neurodesk.ardc.edu.au/containers/$IMAGENAME_BUILDDATE/commands.txt" ]]
+    then
+        echo "Container exists on CVMFS."
+    else
+        echo "+++++++++++++++++++++++++++++++++++++++++++++++++++++++"
+        echo "[DEBUG] Container does not exist on CVMFS"
+        echo "+++++++++++++++++++++++++++++++++++++++++++++++++++++++"
+        exit 2
+    fi
+done < log.txt
+
+
+## test if files can be accessed ok:
+cp /cvmfs/neurodesk.ardc.edu.au/containers/fsl_6.0.5.1_20221016/fsl_6.0.5.1_20221016.simg/opt/fsl-6.0.5.1/data/standard/LowerCingulum_1mm.nii.gz ~/LowerCingulum_1mm.nii.gz