From 984aafe094604a37fa1b6c705e2f47dae8c7ecab Mon Sep 17 00:00:00 2001 From: pgleeson Date: Mon, 19 Aug 2024 15:42:42 +0100 Subject: [PATCH] Regenerated files --- docs/NeuroMLlite_specification.json | 2 +- docs/NeuroMLlite_specification.yaml | 2 +- docs/README.md | 2 +- examples/Example10_Lorenz.json | 2 +- examples/Example11_Synapses.json | 2 +- examples/Example11_Synapses.net.nml | 2 +- examples/Example12_MultiComp.json | 2 +- examples/Example1_TestNetwork.json | 2 +- examples/Example2_TestNetwork.json | 2 +- examples/Example2_TestNetwork.net.nml | 2 +- examples/Example3_Network.json | 2 +- examples/Example3_Network.net.nml | 2 +- examples/Example4_PyNN.json | 2 +- examples/Example4_PyNN.net.nml | 2 +- examples/Example4_PyNN.yaml | 2 +- examples/Example6_PyNN.json | 2 +- examples/Example6_PyNN.net.nml | 2 +- examples/Example6_PyNN_noinputs.json | 2 +- examples/Example6_PyNN_noinputs.net.nml | 2 +- examples/Example7_Brunel2000.json | 2 +- examples/Example7_Brunel2000.net.nml | 2 +- examples/Example8_Extension.json | 2 +- examples/Example9_HindmarshRose.json | 2 +- examples/LEMS_SimExample3.xml | 2 +- examples/LEMS_SimExample4.xml | 2 +- examples/SimExample10.json | 2 +- examples/SimExample11.json | 2 +- examples/SimExample12_MultiComp.json | 2 +- examples/SimExample3.json | 2 +- examples/SimExample4.json | 2 +- examples/SimExample4.yaml | 2 +- examples/SimExample6_PyNN.json | 2 +- examples/SimExample7.json | 2 +- examples/SimExample8.json | 2 +- examples/SimExample9.json | 2 +- examples/arbor/ArborExample.json | 2 +- examples/arbor/ArborExample.yaml | 2 +- examples/arbor/SimArborExample.json | 2 +- examples/arbor/SimArborExample.yaml | 2 +- examples/sonatatest/SimSonataExample.json | 2 +- examples/sonatatest/SonataExample.json | 2 +- examples/spikeratetest/SimSpikers.json | 2 +- examples/spikeratetest/Spikers.json | 2 +- 43 files changed, 43 insertions(+), 43 deletions(-) diff --git a/docs/NeuroMLlite_specification.json b/docs/NeuroMLlite_specification.json index b808453..38c364a 100644 --- a/docs/NeuroMLlite_specification.json +++ b/docs/NeuroMLlite_specification.json @@ -1,5 +1,5 @@ { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "specification": { "Network": { "definition": "A Network containing multiple Population's, connected by Projection's and receiving Input's", diff --git a/docs/NeuroMLlite_specification.yaml b/docs/NeuroMLlite_specification.yaml index cffb2d7..99551d5 100644 --- a/docs/NeuroMLlite_specification.yaml +++ b/docs/NeuroMLlite_specification.yaml @@ -1,4 +1,4 @@ -version: NeuroMLlite v0.5.9 +version: NeuroMLlite v0.6.0 specification: Network: definition: A Network containing multiple Population's, connected by Projection's diff --git a/docs/README.md b/docs/README.md index 920aeb5..53835d8 100644 --- a/docs/README.md +++ b/docs/README.md @@ -1,4 +1,4 @@ -# Specification of NeuroMLlite v0.5.9 +# Specification of NeuroMLlite v0.6.0 **Note: the NeuroMLlite specification is still in development! Subject to change...** ## Network diff --git a/examples/Example10_Lorenz.json b/examples/Example10_Lorenz.json index f1fc935..e37bf0f 100644 --- a/examples/Example10_Lorenz.json +++ b/examples/Example10_Lorenz.json @@ -1,6 +1,6 @@ { "Example10_Lorenz": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 10: Lorenz", "parameters": { "N": 1, diff --git a/examples/Example11_Synapses.json b/examples/Example11_Synapses.json index c826fc0..5dc63dd 100644 --- a/examples/Example11_Synapses.json +++ b/examples/Example11_Synapses.json @@ -1,6 +1,6 @@ { "Example11_Synapses": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 11: synaptic properties", "parameters": { "input_amp": 0.23, diff --git a/examples/Example11_Synapses.net.nml b/examples/Example11_Synapses.net.nml index 9dea1da..ff42b29 100644 --- a/examples/Example11_Synapses.net.nml +++ b/examples/Example11_Synapses.net.nml @@ -1,5 +1,5 @@ - Generated by NeuroMLlite v0.5.9 + Generated by NeuroMLlite v0.6.0 Generated network: Example11_Synapses Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/Example12_MultiComp.json b/examples/Example12_MultiComp.json index 45d65f6..61e8b13 100644 --- a/examples/Example12_MultiComp.json +++ b/examples/Example12_MultiComp.json @@ -1,6 +1,6 @@ { "Example12_MultiComp": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 12: Multicompartmental cells...", "parameters": { "N": 20, diff --git a/examples/Example1_TestNetwork.json b/examples/Example1_TestNetwork.json index be8655b..ed1df17 100644 --- a/examples/Example1_TestNetwork.json +++ b/examples/Example1_TestNetwork.json @@ -1,6 +1,6 @@ { "TestNetwork": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "A simple network with 2 populations & projection between them. No info yet on what the cells are so network can't be simulated.", "populations": { "pop0": { diff --git a/examples/Example2_TestNetwork.json b/examples/Example2_TestNetwork.json index 8a45b5b..c3f0dd4 100644 --- a/examples/Example2_TestNetwork.json +++ b/examples/Example2_TestNetwork.json @@ -1,6 +1,6 @@ { "Example2_TestNetwork": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "A simple network with 2 populations & projection between them. Cells are specified to be NeuroML 2 HH cell models & pre population is given a spiking input.", "cells": { "hhcell": { diff --git a/examples/Example2_TestNetwork.net.nml b/examples/Example2_TestNetwork.net.nml index d6a694e..0f91bb5 100644 --- a/examples/Example2_TestNetwork.net.nml +++ b/examples/Example2_TestNetwork.net.nml @@ -1,5 +1,5 @@ - Generated by NeuroMLlite v0.5.9 + Generated by NeuroMLlite v0.6.0 Generated network: Example2_TestNetwork Generation seed: 1234 diff --git a/examples/Example3_Network.json b/examples/Example3_Network.json index cae5535..c3bf5c8 100644 --- a/examples/Example3_Network.json +++ b/examples/Example3_Network.json @@ -1,6 +1,6 @@ { "Example3_Network": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 3: simple network with 2 populations of NeuroML2 cells, a projection between them and spiking input.", "cells": { "hhcell": { diff --git a/examples/Example3_Network.net.nml b/examples/Example3_Network.net.nml index fe8332c..2036d74 100644 --- a/examples/Example3_Network.net.nml +++ b/examples/Example3_Network.net.nml @@ -1,5 +1,5 @@ - Generated by NeuroMLlite v0.5.9 + Generated by NeuroMLlite v0.6.0 Generated network: Example3_Network Generation seed: 1234 diff --git a/examples/Example4_PyNN.json b/examples/Example4_PyNN.json index 2e71485..cf1a9ed 100644 --- a/examples/Example4_PyNN.json +++ b/examples/Example4_PyNN.json @@ -1,6 +1,6 @@ { "Example4_PyNN": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 4: a network with PyNN cells & inputs", "parameters": { "input_amp": 0.99 diff --git a/examples/Example4_PyNN.net.nml b/examples/Example4_PyNN.net.nml index 82747ce..bf46562 100644 --- a/examples/Example4_PyNN.net.nml +++ b/examples/Example4_PyNN.net.nml @@ -1,5 +1,5 @@ - Generated by NeuroMLlite v0.5.9 + Generated by NeuroMLlite v0.6.0 Generated network: Example4_PyNN Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/Example4_PyNN.yaml b/examples/Example4_PyNN.yaml index 207e1ce..fb7365a 100644 --- a/examples/Example4_PyNN.yaml +++ b/examples/Example4_PyNN.yaml @@ -1,5 +1,5 @@ Example4_PyNN: - version: NeuroMLlite v0.5.9 + version: NeuroMLlite v0.6.0 notes: 'Example 4: a network with PyNN cells & inputs' parameters: input_amp: 0.99 diff --git a/examples/Example6_PyNN.json b/examples/Example6_PyNN.json index ebc7db9..32c91c8 100644 --- a/examples/Example6_PyNN.json +++ b/examples/Example6_PyNN.json @@ -1,6 +1,6 @@ { "Example6_PyNN": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Another network for PyNN - work in progress...", "parameters": { "N_scaling": 0.005, diff --git a/examples/Example6_PyNN.net.nml b/examples/Example6_PyNN.net.nml index 09302c1..77bbcd1 100644 --- a/examples/Example6_PyNN.net.nml +++ b/examples/Example6_PyNN.net.nml @@ -1,5 +1,5 @@ - Generated by NeuroMLlite v0.5.9 + Generated by NeuroMLlite v0.6.0 Generated network: Example6_PyNN Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/Example6_PyNN_noinputs.json b/examples/Example6_PyNN_noinputs.json index c793f72..bdce92b 100644 --- a/examples/Example6_PyNN_noinputs.json +++ b/examples/Example6_PyNN_noinputs.json @@ -1,6 +1,6 @@ { "Example6_PyNN_noinputs": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Another network for PyNN - work in progress...", "parameters": { "N_scaling": 0.005, diff --git a/examples/Example6_PyNN_noinputs.net.nml b/examples/Example6_PyNN_noinputs.net.nml index 12be79b..c192244 100644 --- a/examples/Example6_PyNN_noinputs.net.nml +++ b/examples/Example6_PyNN_noinputs.net.nml @@ -1,5 +1,5 @@ - Generated by NeuroMLlite v0.5.9 + Generated by NeuroMLlite v0.6.0 Generated network: Example6_PyNN_noinputs Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/Example7_Brunel2000.json b/examples/Example7_Brunel2000.json index 2faca33..4dbb9ab 100644 --- a/examples/Example7_Brunel2000.json +++ b/examples/Example7_Brunel2000.json @@ -1,6 +1,6 @@ { "Example7_Brunel2000": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 7: based on network of Brunel 2000", "parameters": { "g": 4, diff --git a/examples/Example7_Brunel2000.net.nml b/examples/Example7_Brunel2000.net.nml index c7e6757..5b191f8 100644 --- a/examples/Example7_Brunel2000.net.nml +++ b/examples/Example7_Brunel2000.net.nml @@ -1,5 +1,5 @@ - Generated by NeuroMLlite v0.5.9 + Generated by NeuroMLlite v0.6.0 Generated network: Example7_Brunel2000 Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/Example8_Extension.json b/examples/Example8_Extension.json index 486d4ac..77ac1f1 100644 --- a/examples/Example8_Extension.json +++ b/examples/Example8_Extension.json @@ -1,6 +1,6 @@ { "Example8_Extension": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 8: general testing...", "parameters": { "N": 10, diff --git a/examples/Example9_HindmarshRose.json b/examples/Example9_HindmarshRose.json index 4416e09..83f4fb8 100644 --- a/examples/Example9_HindmarshRose.json +++ b/examples/Example9_HindmarshRose.json @@ -1,6 +1,6 @@ { "Example9_HindmarshRose": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example 9: HindmarshRose", "parameters": { "N": 1, diff --git a/examples/LEMS_SimExample3.xml b/examples/LEMS_SimExample3.xml index 7e00601..e270493 100644 --- a/examples/LEMS_SimExample3.xml +++ b/examples/LEMS_SimExample3.xml @@ -2,7 +2,7 @@ diff --git a/examples/LEMS_SimExample4.xml b/examples/LEMS_SimExample4.xml index be8366a..b9eed34 100644 --- a/examples/LEMS_SimExample4.xml +++ b/examples/LEMS_SimExample4.xml @@ -2,7 +2,7 @@ diff --git a/examples/SimExample10.json b/examples/SimExample10.json index 2386e97..1ffd155 100644 --- a/examples/SimExample10.json +++ b/examples/SimExample10.json @@ -1,6 +1,6 @@ { "SimExample10": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example10_Lorenz.json", "duration": 10000.0, "dt": 1.0, diff --git a/examples/SimExample11.json b/examples/SimExample11.json index cce2c53..b712dfa 100644 --- a/examples/SimExample11.json +++ b/examples/SimExample11.json @@ -1,6 +1,6 @@ { "SimExample11": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example11_Synapses.json", "duration": 1000.0, "dt": 0.01, diff --git a/examples/SimExample12_MultiComp.json b/examples/SimExample12_MultiComp.json index 8b5ae55..ee3f824 100644 --- a/examples/SimExample12_MultiComp.json +++ b/examples/SimExample12_MultiComp.json @@ -1,6 +1,6 @@ { "SimExample12_MultiComp": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example12_MultiComp.json", "duration": 1000.0, "dt": 0.025, diff --git a/examples/SimExample3.json b/examples/SimExample3.json index 803988d..80f1e01 100644 --- a/examples/SimExample3.json +++ b/examples/SimExample3.json @@ -1,6 +1,6 @@ { "SimExample3": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example3_Network.json", "duration": 1000.0, "dt": 0.025, diff --git a/examples/SimExample4.json b/examples/SimExample4.json index ee2e618..4da66d4 100644 --- a/examples/SimExample4.json +++ b/examples/SimExample4.json @@ -1,6 +1,6 @@ { "SimExample4": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example4_PyNN.json", "duration": 1000.0, "dt": 0.01, diff --git a/examples/SimExample4.yaml b/examples/SimExample4.yaml index f1ef3fd..a7b58d4 100644 --- a/examples/SimExample4.yaml +++ b/examples/SimExample4.yaml @@ -1,5 +1,5 @@ SimExample4: - version: NeuroMLlite v0.5.9 + version: NeuroMLlite v0.6.0 network: Example4_PyNN.yaml duration: 1000.0 dt: 0.01 diff --git a/examples/SimExample6_PyNN.json b/examples/SimExample6_PyNN.json index 53a7358..5a6b13d 100644 --- a/examples/SimExample6_PyNN.json +++ b/examples/SimExample6_PyNN.json @@ -1,6 +1,6 @@ { "SimExample6_PyNN": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example6_PyNN.json", "duration": 100.0, "dt": 0.025, diff --git a/examples/SimExample7.json b/examples/SimExample7.json index 389ad06..5ffb1d7 100644 --- a/examples/SimExample7.json +++ b/examples/SimExample7.json @@ -1,6 +1,6 @@ { "SimExample7": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example7_Brunel2000.json", "duration": 1000.0, "dt": 0.025, diff --git a/examples/SimExample8.json b/examples/SimExample8.json index f7acaa5..5a5bc4f 100644 --- a/examples/SimExample8.json +++ b/examples/SimExample8.json @@ -1,6 +1,6 @@ { "SimExample8": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example8_Extension.json", "duration": 1000.0, "dt": 0.025, diff --git a/examples/SimExample9.json b/examples/SimExample9.json index 7fe2760..7ca7a77 100644 --- a/examples/SimExample9.json +++ b/examples/SimExample9.json @@ -1,6 +1,6 @@ { "SimExample9": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Example9_HindmarshRose.json", "duration": 1000000.0, "dt": 25.0, diff --git a/examples/arbor/ArborExample.json b/examples/arbor/ArborExample.json index 12c1362..05edac6 100644 --- a/examples/arbor/ArborExample.json +++ b/examples/arbor/ArborExample.json @@ -1,6 +1,6 @@ { "ArborExample": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example for testing Arbor", "parameters": { "v_init": -50, diff --git a/examples/arbor/ArborExample.yaml b/examples/arbor/ArborExample.yaml index 455263b..acb1fd7 100644 --- a/examples/arbor/ArborExample.yaml +++ b/examples/arbor/ArborExample.yaml @@ -1,5 +1,5 @@ ArborExample: - version: NeuroMLlite v0.5.9 + version: NeuroMLlite v0.6.0 notes: Example for testing Arbor parameters: v_init: -50 diff --git a/examples/arbor/SimArborExample.json b/examples/arbor/SimArborExample.json index a89098f..4696fc0 100644 --- a/examples/arbor/SimArborExample.json +++ b/examples/arbor/SimArborExample.json @@ -1,6 +1,6 @@ { "SimArborExample": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "ArborExample.json", "duration": 100.0, "dt": 0.01, diff --git a/examples/arbor/SimArborExample.yaml b/examples/arbor/SimArborExample.yaml index 7836548..ee2739c 100644 --- a/examples/arbor/SimArborExample.yaml +++ b/examples/arbor/SimArborExample.yaml @@ -1,5 +1,5 @@ SimArborExample: - version: NeuroMLlite v0.5.9 + version: NeuroMLlite v0.6.0 network: ArborExample.yaml duration: 100.0 dt: 0.01 diff --git a/examples/sonatatest/SimSonataExample.json b/examples/sonatatest/SimSonataExample.json index 844b2a3..22f6329 100644 --- a/examples/sonatatest/SimSonataExample.json +++ b/examples/sonatatest/SimSonataExample.json @@ -1,6 +1,6 @@ { "SimSonataExample": { - "version": "NeuroMLlite v0.5.8", + "version": "NeuroMLlite v0.6.0", "network": "SonataExample.json", "duration": 1000.0, "dt": 0.01, diff --git a/examples/sonatatest/SonataExample.json b/examples/sonatatest/SonataExample.json index 4e877db..dae6d58 100644 --- a/examples/sonatatest/SonataExample.json +++ b/examples/sonatatest/SonataExample.json @@ -1,6 +1,6 @@ { "SonataExample": { - "version": "NeuroMLlite v0.5.8", + "version": "NeuroMLlite v0.6.0", "notes": "Example for testing Sonata", "parameters": { "input_amp": 0.19, diff --git a/examples/spikeratetest/SimSpikers.json b/examples/spikeratetest/SimSpikers.json index 6e1558d..6481df6 100644 --- a/examples/spikeratetest/SimSpikers.json +++ b/examples/spikeratetest/SimSpikers.json @@ -1,6 +1,6 @@ { "SimSpikers": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "network": "Spikers.json", "duration": 10000.0, "dt": 0.025, diff --git a/examples/spikeratetest/Spikers.json b/examples/spikeratetest/Spikers.json index a8a71c9..a9b5fe9 100644 --- a/examples/spikeratetest/Spikers.json +++ b/examples/spikeratetest/Spikers.json @@ -1,6 +1,6 @@ { "Spikers": { - "version": "NeuroMLlite v0.5.9", + "version": "NeuroMLlite v0.6.0", "notes": "Example with spiking entities..", "parameters": { "N": 10,