Add location of neuron when pip installed on Binder & SED-ML update #187
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| # This workflow will build a Java project with Maven | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven | |
| name: Java CI with Maven | |
| on: | |
| push: | |
| branches: [ master, development, experimental, osb*, test* ] | |
| pull_request: | |
| branches: [ master, development, experimental, osb*, test* ] | |
| jobs: | |
| build_and_test: | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| java: [ '8', '11', '16', '17', '19', '21' ] | |
| runs-on: [ubuntu-latest, macos-12, windows-2019] # Note macos-12, not latest/14, due to hdf5 install issue | |
| exclude: | |
| - runs-on: macos-latest | |
| java: "8" | |
| - runs-on: macos-latest | |
| java: "16" | |
| name: Test on Java ${{ matrix.Java }} on ${{ matrix.runs-on }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up JDK ${{ matrix.Java }} | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: ${{ matrix.Java }} | |
| distribution: 'temurin' | |
| - name: Install and test (non Win) | |
| env: | |
| main_repo_branch: ${GITHUB_REF_NAME} | |
| if: ${{ matrix.runs-on != 'windows-2019' }} | |
| run: | | |
| export main_repo_branch=${{env.main_repo_branch}} | |
| if [[ ${main_repo_branch} != "master" && ${main_repo_branch} != "development" && ${main_repo_branch} != "experimental" && ${main_repo_branch} != *"osb"* ]]; then main_repo_branch=development ; fi | |
| echo Using branch $main_repo_branch | |
| git clone https://github.com/NeuroML/org.neuroml.model.injectingplugin.git | |
| cd org.neuroml.model.injectingplugin | |
| git checkout $main_repo_branch | |
| mvn install | |
| cd .. | |
| git clone https://github.com/NeuroML/NeuroML2.git | |
| cd NeuroML2 | |
| git checkout $main_repo_branch | |
| mvn install | |
| cd .. | |
| git clone https://github.com/LEMS/jLEMS.git | |
| cd jLEMS | |
| git checkout $main_repo_branch | |
| mvn install | |
| cd .. | |
| git clone https://github.com/NeuroML/org.neuroml.model.git | |
| cd org.neuroml.model | |
| git checkout $main_repo_branch | |
| mvn install | |
| cd .. | |
| # Install this package and test with Maven | |
| pwd | |
| mvn install | |
| mvn dependency:tree | |
| - name: Install and test (Win) | |
| if: ${{ matrix.runs-on == 'windows-2019' }} | |
| run: | | |
| # Install org.neuroml.model.injectingplugin | |
| $env:main_repo_branch=$env:GITHUB_REF_NAME | |
| if ( $env:main_repo_branch -ne "master" -and $env:main_repo_branch -ne "development" -and $env:main_repo_branch -ne "experimental" -and $env:main_repo_branch -notlike '*osb*' ) { $env:main_repo_branch="development" } | |
| echo "Using branch $env:main_repo_branch..." | |
| git clone https://github.com/NeuroML/org.neuroml.model.injectingplugin.git | |
| cd org.neuroml.model.injectingplugin | |
| git checkout $env:main_repo_branch | |
| mvn install | |
| cd .. | |
| # Install NeuroML2 | |
| echo Using branch $env:GITHUB_REF_NAME | |
| git clone https://github.com/NeuroML/NeuroML2.git | |
| cd NeuroML2 | |
| git checkout $env:main_repo_branch | |
| mvn install | |
| cd .. | |
| git clone https://github.com/LEMS/jLEMS.git | |
| cd jLEMS | |
| git checkout $env:main_repo_branch | |
| mvn install | |
| cd .. | |
| git clone https://github.com/NeuroML/org.neuroml.model.git | |
| cd org.neuroml.model | |
| git checkout $env:main_repo_branch | |
| mvn install | |
| cd .. | |
| # Install this package and test with Maven | |
| pwd | |
| mvn install | |
| mvn dependency:tree |