fix formatting

NeurodataWithoutBorders · Jul 25, 2024 · e174f26 · e174f26
1 parent 5fddba2
commit e174f26
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Showing 5 changed files with 36 additions and 23 deletions.
diff --git a/src/hdf5/HDF5IO.cpp b/src/hdf5/HDF5IO.cpp
@@ -656,6 +656,7 @@ Status HDF5RecordingData::writeDataBlock(
   return Status::Success;
 }
 
-const H5::DataSet* HDF5RecordingData::getDataSet(){
+const H5::DataSet* HDF5RecordingData::getDataSet()
+{
   return dSet.get();
 };
diff --git a/tests/testBase.cpp b/tests/testBase.cpp
@@ -38,19 +38,20 @@ TEST_CASE("TimeSeries", "[base]")
     // Read data back from file
     double* tsBuffer = new double[numSamples];
     BaseRecordingData* tsDset = io->getDataSet(dataPath + "/timestamps");
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(tsDset)->getDataSet(), 
-                                timestampsType,
-                                tsBuffer);
+    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(tsDset)->getDataSet(),
+                    timestampsType,
+                    tsBuffer);
     std::vector<double> tsRead(tsBuffer, tsBuffer + numSamples);
     delete[] tsBuffer;
     REQUIRE(tsRead == timestamps);
 
     // Read data back from file
     float* dataBuffer = new float[numSamples];
     BaseRecordingData* dataDset = io->getDataSet(dataPath + "/data");
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(dataDset)->getDataSet(),
-                    dataType,
-                    dataBuffer);
+    readH5DataBlock(
+        static_cast<HDF5::HDF5RecordingData*>(dataDset)->getDataSet(),
+        dataType,
+        dataBuffer);
     std::vector<float> dataRead(dataBuffer, dataBuffer + numSamples);
     delete[] dataBuffer;
     REQUIRE_THAT(dataRead, Catch::Matchers::Approx(data).margin(1));

diff --git a/tests/testFile.cpp b/tests/testFile.cpp
@@ -37,9 +37,10 @@ TEST_CASE("ElectrodeTable", "[ecephys]")
     SizeType numChannels = 3;
     BaseRecordingData* id_data = io->getDataSet(path + "id");
     int* buffer = new int[numChannels];
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(id_data)->getDataSet(),
-                    BaseDataType::I32,
-                    buffer);
+    readH5DataBlock(
+        static_cast<HDF5::HDF5RecordingData*>(id_data)->getDataSet(),
+        BaseDataType::I32,
+        buffer);
     std::vector<SizeType> read_channels(buffer, buffer + numChannels);
     delete[] buffer;
     REQUIRE(channelIDs == read_channels);

diff --git a/tests/testHDF5IO.cpp b/tests/testHDF5IO.cpp
@@ -65,9 +65,10 @@ TEST_CASE("writeDataset", "[hdf5io]")
 
     BaseRecordingData* dataRead = hdf5io->getDataSet(dataPath);
     int* buffer = new int[numSamples];
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(dataRead)->getDataSet(),
-                    BaseDataType::I32,
-                    buffer);
+    readH5DataBlock(
+        static_cast<HDF5::HDF5RecordingData*>(dataRead)->getDataSet(),
+        BaseDataType::I32,
+        buffer);
     std::vector<int> dataOut(buffer, buffer + numSamples);
     delete[] buffer;
 
@@ -100,9 +101,10 @@ TEST_CASE("writeDataset", "[hdf5io]")
     // Read back the 1D data block from 3D dataset
     BaseRecordingData* dataRead1D = hdf5io->getDataSet(dataPath);
     int* buffer1D = new int[numCols];
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(dataRead1D)->getDataSet(),
-                    BaseDataType::I32, 
-                    buffer1D);
+    readH5DataBlock(
+        static_cast<HDF5::HDF5RecordingData*>(dataRead1D)->getDataSet(),
+        BaseDataType::I32,
+        buffer1D);
     std::vector<int> dataOut1D(buffer1D, buffer1D + numCols);
     delete[] buffer1D;
 
@@ -139,8 +141,10 @@ TEST_CASE("writeDataset", "[hdf5io]")
     // Read back the 2D data block
     BaseRecordingData* dataRead = hdf5io->getDataSet(dataPath);
     int* buffer = new int[numRows * numCols];
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(dataRead)->getDataSet(),
-        BaseDataType::I32, buffer);
+    readH5DataBlock(
+        static_cast<HDF5::HDF5RecordingData*>(dataRead)->getDataSet(),
+        BaseDataType::I32,
+        buffer);
     std::vector<int> dataOut(buffer, buffer + numRows * numCols);
     delete[] buffer;
 
@@ -175,8 +179,10 @@ TEST_CASE("writeDataset", "[hdf5io]")
     BaseRecordingData* dataRead1D = hdf5io->getDataSet(dataPath);
     int* buffer1D =
         new int[width];  // Assuming 'width' is the size of the 1D data block
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(dataRead1D)->getDataSet(),
-    BaseDataType::I32, buffer1D);
+    readH5DataBlock(
+        static_cast<HDF5::HDF5RecordingData*>(dataRead1D)->getDataSet(),
+        BaseDataType::I32,
+        buffer1D);
     std::vector<int> dataOut1D(buffer1D, buffer1D + width);
     delete[] buffer1D;
 
@@ -211,7 +217,10 @@ TEST_CASE("writeDataset", "[hdf5io]")
     int* buffer2D =
         new int[height * width];  // Assuming 'numRows' and 'numCols' define the
                                   // 2D data block size
-    readH5DataBlock(static_cast<HDF5::HDF5RecordingData*>(dataRead2D)->getDataSet(), BaseDataType::I32, buffer2D);
+    readH5DataBlock(
+        static_cast<HDF5::HDF5RecordingData*>(dataRead2D)->getDataSet(),
+        BaseDataType::I32,
+        buffer2D);
     std::vector<int> dataOut2D(buffer2D, buffer2D + height * width);
     delete[] buffer2D;
 

diff --git a/tests/testUtils.hpp b/tests/testUtils.hpp
@@ -100,8 +100,9 @@ inline std::vector<double> getMockTimestamps(SizeType numSamples = 1000,
   return mockTimestamps;
 }
 
-inline void readH5DataBlock(const H5::DataSet* dSet, const BaseDataType& type, void*
-buffer)
+inline void readH5DataBlock(const H5::DataSet* dSet,
+                            const BaseDataType& type,
+                            void* buffer)
 {
   H5::DataSpace fSpace = dSet->getSpace();
   H5::DataType nativeType = HDF5::HDF5IO::getNativeType(type);