Memory optimizations for signal & transient noise #623
Workflow file for this run
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| name: windows-utils-test | |
| on: | |
| push: | |
| paths-ignore: [".ci_helpers/docker/**", "**/docker.yaml"] | |
| pull_request: | |
| paths-ignore: [".ci_helpers/docker/**", "**/docker.yaml"] | |
| pull_request_target: | |
| paths-ignore: [".ci_helpers/docker/**", "**/docker.yaml"] | |
| workflow_dispatch: | |
| env: | |
| CONDA_ENV: echopype | |
| TEST_DATA_FOLDER: ${{ github.workspace }}\\test_data | |
| jobs: | |
| windows-test: | |
| name: windows-${{ matrix.python-version }}-build | |
| runs-on: "windows-latest" | |
| continue-on-error: ${{ matrix.experimental }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - python-version: 3.9 | |
| experimental: false | |
| defaults: | |
| run: | |
| shell: powershell | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set environment variables | |
| run: | | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Setup miniconda w/mamba | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| mamba-version: "*" | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| activate-environment: ${{ env.CONDA_ENV }} | |
| environment-file: .ci_helpers/py${{ matrix.python-version }}.yaml | |
| # Currently problematic! See https://github.com/mamba-org/mamba/issues/2157 | |
| # - name: Setup micromamba | |
| # uses: mamba-org/provision-with-micromamba@v15 | |
| # with: | |
| # environment-file: .ci_helpers/py${{ matrix.python-version }}.yaml | |
| # environment-name: ${{ env.CONDA_ENV }} | |
| # cache-env: true | |
| # cache-env-key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles(format('.ci_helpers/py{0}.yaml', matrix.python-version)) }} | |
| - name: Print conda info | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Install dev tools | |
| run: | | |
| mamba install -c conda-forge -n ${{ env.CONDA_ENV }} --yes --file requirements-dev.txt | |
| - name: Install echopype | |
| run: | | |
| python -m pip install -e . | |
| # Add steps for downloading and unzipping test data | |
| - name: Create Test Data Directory | |
| run: New-Item -ItemType Directory -Force -Path ${{ env.TEST_DATA_FOLDER }} | |
| - name: Install wget | |
| run: choco install wget | |
| shell: powershell | |
| #- name: Download Test Data from Google Drive | |
| # run: | | |
| # $downloadLink = "https://drive.google.com/uc?export=download&id=1ofiSQ4zDwXfHE65tow4_jDIceBYHNW_8" | |
| # $downloadPage = Invoke-WebRequest -Uri $downloadLink -OutFile "download.html" | |
| # $confirmCode = (Select-String -Path "download.html" -Pattern 'confirm=([0-9A-Za-z_]+)' -AllMatches).Matches.Groups[1].Value | |
| # $downloadFileLink = "https://drive.google.com/uc?export=download&confirm=$confirmCode&id=1ofiSQ4zDwXfHE65tow4_jDIceBYHNW_8" | |
| # Invoke-WebRequest -Uri $downloadFileLink -OutFile "test_data.zip" | |
| - name: Download Test Data from Google Drive | |
| run: | | |
| Remove-Item alias:wget | |
| wget --quiet --save-cookies cookies.txt --keep-session-cookies --no-check-certificate 'https://drive.google.com/uc?export=download&id=1ofiSQ4zDwXfHE65tow4_jDIceBYHNW_8' -O- | Out-String | Select-String -Pattern 'confirm=([0-9A-Za-z_]+)' | %{ $_.Matches.Groups[1].Value } > confirm.txt | |
| $confirmCode = Get-Content confirm.txt | |
| wget --load-cookies cookies.txt "https://drive.google.com/uc?export=download&confirm=$confirmCode&id=1ofiSQ4zDwXfHE65tow4_jDIceBYHNW_8" -O test_data.zip | |
| Remove-Item cookies.txt -Force | |
| Remove-Item confirm.txt -Force | |
| shell: powershell | |
| - name: Unzip Test Data | |
| run: Expand-Archive -LiteralPath "test_data.zip" -DestinationPath ${{ env.TEST_DATA_FOLDER }} -Force | |
| - name: Running all Tests | |
| run: | | |
| pytest -vvv -rx --cov=echopype --cov-report=xml --log-cli-level=WARNING --disable-warnings echopype/tests/utils |& tee ci_${{ matrix.python-version }}_test_log.log |