pr.yaml

name: Test PR

on:
  pull_request:
    paths-ignore: ["**/docker.yaml", "docs"]

env:
  NUM_WORKERS: 2
  TEST_DATA_FOLDER: ${{ github.workspace }}/test_data

jobs:
  test:
    name: ${{ matrix.python-version }}--${{ matrix.runs-on }}
    runs-on: ${{ matrix.runs-on }}
    if: ${{ !contains(github.event.pull_request.title, '[skip ci]') }}
    continue-on-error: ${{ matrix.experimental }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9", "3.10", "3.11"]
        runs-on: [ubuntu-latest]
        experimental: [false]
    services:
      # TODO: figure out how to update tag when there's a new one
      minio:
        image: cormorack/minioci:latest
        ports:
          - 9000:9000
      httpserver:
        image: cormorack/http:latest
        ports:
          - 8080:80
    steps:
      - name: Checkout repo
        uses: actions/checkout@v4
        with:
          fetch-depth: 0 # Fetch all history for all branches and tags.
      - name: Set up Python
        uses: actions/setup-python@v4.7.1
        with:
          python-version: ${{ matrix.python-version }}
      - name: Upgrade pip
        run: python -m pip install --upgrade pip
      - name: Set environment variables
        run: |
          echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV
      - name: Remove docker-compose python
        run: sed -i "/docker-compose/d" requirements-dev.txt
      - name: Install dev tools
        run: python -m pip install -r requirements-dev.txt
      # We only want to install this on one run, because otherwise we'll have
      # duplicate annotations.
      - name: Install error reporter
        if: ${{ matrix.python-version == '3.9' }}
        run: python -m pip install pytest-github-actions-annotate-failures
      - name: Install echopype
        run: python -m pip install -e ".[plot]"
      - name: Print installed packages
        run: python -m pip list
      - name: Copying test data to services
        run: |
          python .ci_helpers/docker/setup-services.py --deploy --data-only --http-server ${{ job.services.httpserver.id }}

          # Check data endpoint
          curl http://localhost:8080/data/
      # Add the following steps for downloading and unzipping test data
      - name: Download Test Data from Google Drive
        run: |
          wget --load-cookies /tmp/cookies.txt "https://drive.google.com/uc?export=download&confirm=$(wget --quiet --save-cookies /tmp/cookies.txt --keep-session-cookies --no-check-certificate 'https://drive.google.com/uc?export=download&id=1ofiSQ4zDwXfHE65tow4_jDIceBYHNW_8' -O- | sed -rn 's/.*confirm=([0-9A-Za-z_]+).*/\1\n/p')&id=1ofiSQ4zDwXfHE65tow4_jDIceBYHNW_8" -O test_data.zip && rm -rf /tmp/cookies.txt
          unzip -n test_data.zip -d ${{ env.TEST_DATA_FOLDER }}
      - name: Finding changed files
        id: files
        uses: Ana06/get-changed-files@v2.2.0
        with:
          format: 'csv'
      - name: Print Changed files
        run: echo "${{ steps.files.outputs.added_modified_renamed }}"
      - name: Running all Tests
        if: contains(github.event.pull_request.title, '[all tests ci]')
        run: |
          pytest -vvv -rx --numprocesses=${{ env.NUM_WORKERS }} --max-worker-restart=3 --cov=echopype --cov-report=xml --log-cli-level=WARNING --disable-warnings
      - name: Running Tests
        if: ${{ !contains(github.event.pull_request.title, '[all tests ci]') }}
        run: |
          python .ci_helpers/run-test.py --pytest-args="--log-cli-level=WARNING,-vvv,-rx,--numprocesses=${{ env.NUM_WORKERS }},--max-worker-restart=3,--disable-warnings" --include-cov ${{ steps.files.outputs.added_modified_renamed }}
      - name: Upload code coverage to Codecov
        uses: codecov/codecov-action@v3
        with:
          file: ./coverage.xml
          flags: unittests
          env_vars: RUNNER_OS,PYTHON_VERSION
          name: codecov-umbrella
          fail_ci_if_error: false