Code

Merge/seabed : [all tests ci]#135

Code

Merged

ruxandra-valcu merged 50 commits intonext-devOceanStreamIO/echopype:next-devfrom merge/seabedOceanStreamIO/echopype:merge/seabedCopy head branch name to clipboardDec 5, 2023

+250-348

Commits

Commits on Aug 10, 2023

• Initial implementation of the seabed masking.

  

  mihaiboldeanu

  authored and

  beatfactor

  committed
  8b306d7

• Code for seabed masking

  

  mihaiboldeanu

  authored and

  beatfactor

  committed
  8a9b984

• Changed dilation source package from cv2 to skimage.

  

  mihaiboldeanu

  authored and

  beatfactor

  committed
  5ee44d7

Commits on Aug 13, 2023

• some refactoring and add unit test

  beatfactor

  committed
  1d0fd66

Commits on Aug 16, 2023

• Update echopype/mask/mask_seabed.py

  Show description for b689367
  

  beatfactor

  and

  simedroniraluca

  authored
  b689367

Commits on Aug 17, 2023

• Update echopype/tests/mask/test_mask_seabed.py

  Show description for e70a8b6
  

  ruxandra-valcu

  and

  simedroniraluca

  authored
  e70a8b6

• Re-added mask_transformation, with only the necessary functions kept

  ruxandra-valcu

  committed
  481b3a2

• Changed the tests to be able to autodownload its files - must check that I have the correct one though since the test isn't passing

  ruxandra-valcu

  committed
  74a6840

• Cleaned up mask_transformation

  ruxandra-valcu

  committed
  f6d554e

• Copyright notices

  Show description for 3f6cb4b
  

  ruxandra-valcu

  and

  simedroniraluca

  authored
  3f6cb4b

• Update echopype/mask/mask_seabed.py

  Show description for 59693af
  

  ruxandra-valcu

  and

  simedroniraluca

  authored
  59693af

• Update echopype/mask/mask_seabed.py

  Show description for 689787f
  

  ruxandra-valcu

  and

  simedroniraluca

  authored
  689787f

• Update incorrect file name

  simedroniraluca

  committed
  c0556b1

Commits on Aug 18, 2023

• Mask transformation consistency

  ruxandra-valcu

  committed
  b1e84d7

• Mask transformation consistency

  ruxandra-valcu

  committed
  02452cf

• Removing pytest req

  ruxandra-valcu

  committed
  4630377

Commits on Sep 13, 2023

• Refactoring

  ruxandra-valcu

  committed
  e4e3b7c

• Fix twod test

  ruxandra-valcu

  committed
  6088022

• Refactoring

  ruxandra-valcu

  committed
  be0e42c

• Test fixes

  ruxandra-valcu

  committed
  036c3e6

• Fixing merge compatibility

  ruxandra-valcu

  committed
  70d251d

Commits on Sep 14, 2023

• Added dataset generation for datasets enriched with beam angle and location data

  ruxandra-valcu

  committed
  9221f2c

• Added dataset generation for datasets enriched with beam angle and location data

  ruxandra-valcu

  committed
  0d9eff2

• Added channel selection.

  ruxandra-valcu

  committed
  2c9e01a

Commits on Sep 15, 2023

• Modified Blackwell methods to use the physical beam angle rather than the raw EK60 beam angle - doing this using a correction on the angle itself (rather than modifying the constants) since the cha…

  Show description for 0d7e4e5
  ruxandra-valcu

  committed
  0d7e4e5

Commits on Sep 18, 2023

• Changed parser in parse_azfp.py to maintain consistency over other parsers. (OSOceanAcoustics#1135)

  Show description for d11c0e2
  

  3 peopleauthored
  d11c0e2

Commits on Sep 19, 2023

• Import fix

  ruxandra-valcu

  committed
  f9023ec

• ci: added support for running individual test files (OSOceanAcoustics#1166)

  Show description for ea01132
  praneethratna

  authored
  ea01132

Commits on Sep 21, 2023

• refactor(convert): refactor and cleanup parsed2zarr (OSOceanAcoustics#1070)

  Show description for 2e564e9
  

  3 peopleauthored
  2e564e9

• fix(commongrid): improve 'compute_MVBS' using flox [all tests ci] (OSOceanAcoustics#1124)

  Show description for b887be8
  

  4 peopleauthored
  b887be8

Commits on Sep 22, 2023

• Merge branch 'dev' into feature/add-seabed-mask

  ruxandra-valcu

  authored
  99fd516

Commits on Oct 9, 2023

• Refactored seabed generation masks to use parameter dicts and function maps

  ruxandra-valcu

  committed
  6c4b8cf

• Added multichannel mask support to seabed generation

  ruxandra-valcu

  committed
  00c04b6

Commits on Oct 10, 2023

• Fix build bug

  ruxandra-valcu

  committed
  04c7482

Commits on Oct 16, 2023

• Refactor seabed detection functions for consistent return type (#92)

  simedroniraluca

  authored
  83330e8

Commits on Oct 31, 2023

• Update outdated comments (#102)

  Show description for 2827b17
  simedroniraluca

  authored
  2827b17

Commits on Nov 7, 2023

• Merge/dev (#113)

  Show description for fa1a3b0
  

  7 peopleauthored
  fa1a3b0

Commits on Nov 27, 2023

• Ariza conversion and initial version of ariza_interactive

  ruxandra-valcu

  committed
  abf9c9f

• Added xarray mask transformations

  ruxandra-valcu

  committed
  8805e66

• Added experimental secondary thressholding support

  ruxandra-valcu

  committed
  fd888ee

Commits on Nov 28, 2023

• Added shoal demasking option for ariza (they show up as "spikes" in the mask)

  ruxandra-valcu

  committed
  efafb28

Commits on Dec 4, 2023

• Stash

  ruxandra-valcu

  committed
  36ef61b

Commits on Dec 5, 2023

• Functional blackwell

  ruxandra-valcu

  committed
  42d0183

• Functional blackwell

  ruxandra-valcu

  committed
  4ba912a

• For merge reasons

  ruxandra-valcu

  committed
  70c0534

• Blackwell can now take custom percentile values

  ruxandra-valcu

  committed
  8008cc6

• Implemented modified Blackwell

  ruxandra-valcu

  committed
  7e6c5a6

• Fixed requirements.txt

  ruxandra-valcu

  committed
  7152bab

• Merge branch 'next-dev' into merge/seabed

  ruxandra-valcu

  authored
  f09ae84

• Removed an unused import

  ruxandra-valcu

  committed
  14cc7f0