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Merge/seabed : [all tests ci] #135

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Dec 5, 2023
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8b306d7
Initial implementation of the seabed masking.
mihaiboldeanu Aug 1, 2023
8a9b984
Code for seabed masking
mihaiboldeanu Aug 1, 2023
5ee44d7
Changed dilation source package from cv2 to skimage.
mihaiboldeanu Aug 3, 2023
1d0fd66
some refactoring and add unit test
beatfactor Aug 13, 2023
b689367
Update echopype/mask/mask_seabed.py
beatfactor Aug 16, 2023
e70a8b6
Update echopype/tests/mask/test_mask_seabed.py
ruxandra-valcu Aug 17, 2023
481b3a2
Re-added mask_transformation, with only the necessary functions kept
ruxandra-valcu Aug 17, 2023
74a6840
Changed the tests to be able to autodownload its files - must check t…
ruxandra-valcu Aug 17, 2023
f6d554e
Cleaned up mask_transformation
ruxandra-valcu Aug 17, 2023
3f6cb4b
Copyright notices
ruxandra-valcu Aug 17, 2023
59693af
Update echopype/mask/mask_seabed.py
ruxandra-valcu Aug 17, 2023
689787f
Update echopype/mask/mask_seabed.py
ruxandra-valcu Aug 17, 2023
c0556b1
Update incorrect file name
simedroniraluca Aug 17, 2023
b1e84d7
Mask transformation consistency
ruxandra-valcu Aug 18, 2023
02452cf
Mask transformation consistency
ruxandra-valcu Aug 18, 2023
4630377
Removing pytest req
ruxandra-valcu Aug 18, 2023
e4e3b7c
Refactoring
ruxandra-valcu Sep 13, 2023
6088022
Fix twod test
ruxandra-valcu Sep 13, 2023
be0e42c
Refactoring
ruxandra-valcu Sep 13, 2023
036c3e6
Test fixes
ruxandra-valcu Sep 13, 2023
70d251d
Fixing merge compatibility
ruxandra-valcu Sep 13, 2023
9221f2c
Added dataset generation for datasets enriched with beam angle and lo…
ruxandra-valcu Sep 14, 2023
0d9eff2
Added dataset generation for datasets enriched with beam angle and lo…
ruxandra-valcu Sep 14, 2023
2c9e01a
Added channel selection.
ruxandra-valcu Sep 14, 2023
0d7e4e5
Modified Blackwell methods to use the physical beam angle rather than…
ruxandra-valcu Sep 15, 2023
d11c0e2
Changed parser in `parse_azfp.py` to maintain consistency over other …
praneethratna Sep 18, 2023
f9023ec
Import fix
ruxandra-valcu Sep 19, 2023
ea01132
ci: added support for running individual test files (#1166)
praneethratna Sep 19, 2023
2e564e9
refactor(convert): refactor and cleanup parsed2zarr (#1070)
lsetiawan Sep 21, 2023
b887be8
fix(commongrid): improve 'compute_MVBS' using flox [all tests ci] (#…
lsetiawan Sep 21, 2023
99fd516
Merge branch 'dev' into feature/add-seabed-mask
ruxandra-valcu Sep 22, 2023
6c4b8cf
Refactored seabed generation masks to use parameter dicts and functio…
ruxandra-valcu Oct 9, 2023
00c04b6
Added multichannel mask support to seabed generation
ruxandra-valcu Oct 9, 2023
04c7482
Fix build bug
ruxandra-valcu Oct 10, 2023
83330e8
Refactor seabed detection functions for consistent return type (#92)
simedroniraluca Oct 16, 2023
2827b17
Update outdated comments (#102)
simedroniraluca Oct 31, 2023
fa1a3b0
Merge/dev (#113)
ruxandra-valcu Nov 7, 2023
abf9c9f
Ariza conversion and initial version of ariza_interactive
ruxandra-valcu Nov 27, 2023
8805e66
Added xarray mask transformations
ruxandra-valcu Nov 27, 2023
fd888ee
Added experimental secondary thressholding support
ruxandra-valcu Nov 27, 2023
efafb28
Added shoal demasking option for ariza (they show up as "spikes" in t…
ruxandra-valcu Nov 28, 2023
36ef61b
Stash
ruxandra-valcu Dec 4, 2023
42d0183
Functional blackwell
ruxandra-valcu Dec 5, 2023
4ba912a
Functional blackwell
ruxandra-valcu Dec 5, 2023
70c0534
For merge reasons
ruxandra-valcu Dec 5, 2023
8008cc6
Blackwell can now take custom percentile values
ruxandra-valcu Dec 5, 2023
7e6c5a6
Implemented modified Blackwell
ruxandra-valcu Dec 5, 2023
7152bab
Fixed requirements.txt
ruxandra-valcu Dec 5, 2023
f09ae84
Merge branch 'next-dev' into merge/seabed
ruxandra-valcu Dec 5, 2023
14cc7f0
Removed an unused import
ruxandra-valcu Dec 5, 2023
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1 change: 0 additions & 1 deletion echopype/mask/api.py
Original file line number Diff line number Diff line change
Expand Up @@ -643,7 +643,6 @@ def get_shoal_mask_multichannel(
return mask



def get_seabed_mask(
source_Sv: Union[xr.Dataset, str, pathlib.Path],
parameters: dict,
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