.gitignore

pipeline/iPCR-tools/.idea
pipeline/iPCR-tools/.gradle
pipeline/iPCR-tools/gradle
pipeline/iPCR-tools/build/classes
pipeline/iPCR-tools/build/tmp
pipeline/iPCR-tools/build/resources
pipeline/iPCR-tools/gradlew
pipeline/iPCR-tools/gradlew.bat
# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# pkgdown site
docs/

# translation temp files
po/*~

# Data files
**/data

# Output files
**/output

# Logs
**/logs/

# PDFs
*.pdf

# Backup code (old code)
**/backup*

# R project object
*.Rproj

# Data for IGV plots
finemapping_bundle/
**/bundle/

/analysis/sequencing_evaluation/
/analysis/r/intergrated_genome_viewer/
/.idea/