Merge pull request #650 from kochebina/Buffer #884
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| name: CI | |
| on: | |
| push: | |
| branches: [ develop ] | |
| pull_request: | |
| branches: [ develop ] | |
| schedule: | |
| - cron: '0 0 * * 0,3' | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| options: [none, rtk, torch, optic] | |
| env: | |
| ROOT_VERSION: 'v6-26-08' | |
| GEANT4_VERSION: 'v11.1.1' | |
| ITK_VERSION: 'v5.3.0' | |
| ROOT_DIR: $(HOME)/software/root | |
| GEANT4_DIR: $(HOME)/software/geant4 | |
| steps: | |
| - name: Checkout github repo | |
| uses: actions/checkout@v3 | |
| with: | |
| lfs: true | |
| - name: Checkout LFS objects | |
| run: git lfs checkout | |
| - name: Cache | |
| id: cache_gate_dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/software | |
| key: ${{ matrix.os }}-geant4-${{ env.GEANT4_VERSION }}-root-${{ env.ROOT_VERSION }}-build4 | |
| restore-keys: ${{ matrix.os }}-geant4-${{ env.GEANT4_VERSION }}-root-${{ env.ROOT_VERSION }}-build4 | |
| - name: Install dependencies | |
| run: | | |
| if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then | |
| sudo apt-get update -qq | |
| sudo apt-get install -y gcc \ | |
| g++ \ | |
| make \ | |
| binutils \ | |
| libx11-dev \ | |
| libxpm-dev \ | |
| libxft-dev \ | |
| libxext-dev \ | |
| qtbase5-dev \ | |
| qt5-qmake \ | |
| git \ | |
| cmake \ | |
| libssl-dev \ | |
| python3.8-dev \ | |
| ccache \ | |
| fftw3-dev | |
| gcc -v | |
| elif [ "${{ matrix.os }}" == "macos-latest" ]; then | |
| brew update | |
| brew cleanup | |
| brew config | |
| rm -rf /usr/local/bin/python3.11-config /usr/local/bin/2to3-3.11 /usr/local/bin/idle3.11 /usr/local/bin/pydoc3.11 /usr/local/bin/python3.11 | |
| rm -rf /usr/local/bin/python3-config /usr/local/bin/2to3 /usr/local/bin/idle3 /usr/local/bin/pydoc3 /usr/local/bin/python3 | |
| brew install --force --verbose --overwrite --debug qt5 \ | |
| ccache \ | |
| tbb \ | |
| xrootd \ | |
| fftw | |
| brew link qt5 --force && sudo ln -s /usr/local/opt/qt/mkspecs /usr/local/mkspecs && sudo ln -s /usr/local/opt/qt/plugins /usr/local/plugins | |
| export PATH=/usr/local/opt/qt/bin:$PATH | |
| export LDFLAGS="-L/usr/local/opt/qt/lib -L/usr/local/opt/llvm/lib" | |
| export CPPFLAGS="-I/usr/local/opt/qt/include -I/usr/local/opt/llvm/include -fopenmp" | |
| fi | |
| cd $HOME/ | |
| mkdir -p software option_dependencies | |
| cmake --version | |
| - name: Install root | |
| run: | | |
| if [ "${{ steps.cache_gate_dependencies.outputs.cache-hit }}" != 'true' ] && [ "${{ matrix.options }}" == 'none' ]; then | |
| cd $HOME/software | |
| mkdir root | |
| cd root | |
| mkdir src bin install | |
| git clone --branch $ROOT_VERSION https://github.com/root-project/root.git --depth 1 src | |
| cd bin | |
| cmake ../src -DCMAKE_CXX_STANDARD=17 \ | |
| -Dpython=OFF \ | |
| -Dpyroot=OFF \ | |
| -Dclad=OFF \ | |
| -DCMAKE_INSTALL_PREFIX=$HOME/software/root/install | |
| make -j4 install | |
| cd .. | |
| rm -rf bin src | |
| fi | |
| - name: Install Geant4 | |
| run: | | |
| if [ "${{ steps.cache_gate_dependencies.outputs.cache-hit }}" != 'true' ] && [ "${{ matrix.options }}" == 'none' ]; then | |
| cd $HOME/software | |
| mkdir geant4 | |
| cd geant4 | |
| mkdir src bin install data | |
| git clone --branch $GEANT4_VERSION https://github.com/Geant4/geant4.git --depth 1 src | |
| cd bin | |
| cmake -DGEANT4_INSTALL_DATA=ON \ | |
| -DGEANT4_BUILD_MULTITHREADED=OFF \ | |
| -DGEANT4_INSTALL_DATADIR=$HOME/software/geant4/data \ | |
| -DCMAKE_INSTALL_PREFIX=$HOME/software/geant4/install \ | |
| ../src | |
| make -j4 install | |
| cd .. | |
| rm -rf src bin | |
| fi | |
| - name: Install option dependencies | |
| run: | | |
| if [ "${{ steps.cache_gate_dependencies.outputs.cache-hit }}" == 'true' ]; then | |
| cd $HOME/option_dependencies | |
| if [ "${{ matrix.options }}" == 'torch' ]; then | |
| if [ "${{ matrix.os }}" == 'ubuntu-latest' ]; then | |
| wget https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-1.10.1%2Bcpu.zip | |
| unzip libtorch-cxx11-abi-shared-with-deps-1.10.1+cpu.zip | |
| elif [ "${{ matrix.os }}" == 'macos-latest' ]; then | |
| wget https://download.pytorch.org/libtorch/cpu/libtorch-macos-1.10.1.zip | |
| unzip libtorch-macos-1.10.1.zip | |
| fi | |
| fi | |
| if [ "${{ matrix.options }}" == 'rtk' ]; then | |
| mkdir rtk | |
| cd rtk | |
| mkdir src bin | |
| git clone --branch $ITK_VERSION https://github.com/InsightSoftwareConsortium/ITK.git --depth 1 src | |
| cd bin | |
| cmake -DCMAKE_CXX_FLAGS="-std=c++17" -DBUILD_TESTING=OFF -DITK_USE_FFTWD=ON -DITK_USE_FFTWF=ON -DITK_USE_SYSTEM_FFTW:BOOL=ON -DITK_MINIMUM_COMPLIANCE_LEVEL=3 -DModule_RTK=ON -DREMOTE_GIT_TAG_RTK=master ../src | |
| make -j4 | |
| fi | |
| cd $HOME/option_dependencies | |
| ls | |
| else | |
| if [ "${{ matrix.options }}" != 'none' ]; then | |
| echo "Create the cache first and run the job again" | |
| exit 1 | |
| fi | |
| fi | |
| - name: Configure Gate | |
| run: | | |
| if [ "${{ steps.cache_gate_dependencies.outputs.cache-hit }}" == 'true' ]; then | |
| cd $HOME | |
| export ROOTSYS=$HOME/software/root/install | |
| export PATH=${ROOTSYS}:${PATH} | |
| source $HOME/software/root/install/bin/thisroot.sh | |
| source $HOME/software/geant4/install/bin/geant4.sh | |
| mkdir build | |
| cd build | |
| which cmake | |
| cmake --version | |
| export GATE_USE_TORCH=OFF | |
| export GATE_USE_RTK=OFF | |
| export GATE_USE_OPTICAL=OFF | |
| if [ "${{ matrix.options }}" == 'torch' ]; then | |
| export GATE_USE_TORCH=ON | |
| fi | |
| if [ "${{ matrix.options }}" == 'rtk' ]; then | |
| export GATE_USE_RTK=ON | |
| fi | |
| if [ "${{ matrix.options }}" == 'optic' ]; then | |
| export GATE_USE_OPTIC=ON | |
| fi | |
| cmake -DGATE_USE_TORCH=$GATE_USE_TORCH \ | |
| -DTorch_DIR=$HOME/option_dependencies/libtorch/share/cmake/Torch \ | |
| -DGATE_COMPILE_GATEDIGIT=ON \ | |
| -DGATE_USE_RTK=$GATE_USE_RTK \ | |
| -DITK_DIR=$HOME/option_dependencies/rtk/bin/ \ | |
| -DGATE_USE_OPTICAL=$GATE_USE_OPTICAL \ | |
| -DBUILD_TESTING=ON \ | |
| $GITHUB_WORKSPACE | |
| fi | |
| - name: Configure CTest | |
| if: steps.cache_gate_dependencies.outputs.cache-hit == 'true' | |
| run: | | |
| cd $HOME | |
| cat > dashboard.cmake << EOF | |
| set(CTEST_SITE "Github.macos-latest.none") | |
| file(TO_CMAKE_PATH "$HOME" CTEST_DASHBOARD_ROOT) | |
| file(TO_CMAKE_PATH "$GITHUB_WORKSPACE" CTEST_SOURCE_DIRECTORY) | |
| file(TO_CMAKE_PATH "$HOME/build" CTEST_BINARY_DIRECTORY) | |
| set(dashboard_source_name "$GITHUB_REPOSITORY") | |
| if("$GITHUB_REF" MATCHES "^refs/pull/") | |
| set(branch "") | |
| set(pr "-PR$GITHUB_REF") | |
| set(dashboard_model "Experimental") | |
| elseif("$GITHUB_REF" STREQUAL "refs/heads/develop") | |
| set(branch "-develop") | |
| set(pr "") | |
| set(dashboard_model "Continuous") | |
| else() | |
| set(branch "-BRANCH$GITHUB_REF") | |
| set(pr "") | |
| set(dashboard_model "Experimental") | |
| endif() | |
| set(CTEST_BUILD_NAME "github_macos-latest.none-Build$GITHUB_RUN_NUMBER\${pr}\${branch}") | |
| set(CTEST_UPDATE_VERSION_ONLY 1) | |
| set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) | |
| set(CTEST_CONFIGURATION_TYPE "Release") | |
| set(CTEST_CMAKE_GENERATOR "Unix Makefiles") | |
| set(CTEST_BUILD_FLAGS "\${CTEST_BUILD_FLAGS} -j4") | |
| set(CTEST_CUSTOM_WARNING_EXCEPTION | |
| \${CTEST_CUSTOM_WARNING_EXCEPTION} | |
| # macOS Azure Pipelines | |
| "ld: warning: text-based stub file" | |
| ) | |
| set(dashboard_no_clean 1) | |
| set(ENV{CC} $(cCompiler)) | |
| set(ENV{CXX} $(cxxCompiler)) | |
| string(TIMESTAMP build_date "%Y-%m-%d") | |
| message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") | |
| message("CTEST_SITE = \${CTEST_SITE}") | |
| ctest_start("\${dashboard_model}") | |
| ctest_configure(CAPTURE_CMAKE_ERROR configure_errors RETURN_VALUE configure_Results) | |
| ctest_build(NUMBER_ERRORS build_errors RETURN_VALUE build_Results) | |
| ctest_submit(RETURN_VALUE submit_Results) | |
| if ((NOT \${configure_errors} EQUAL 0) OR (NOT \${configure_Results} EQUAL 0)) | |
| message( FATAL_ERROR "Configuration error" ) | |
| endif() | |
| if ((NOT \${build_errors} EQUAL 0) OR (NOT \${build_Results} EQUAL 0)) | |
| message( FATAL_ERROR "Build error" ) | |
| endif() | |
| if (NOT \${submit_Results} EQUAL 0) | |
| message( FATAL_ERROR "Submit error" ) | |
| endif() | |
| EOF | |
| cat dashboard.cmake | |
| - name: Build Gate | |
| run: | | |
| if [ "${{ steps.cache_gate_dependencies.outputs.cache-hit }}" == 'true' ]; then | |
| cd $HOME/build | |
| cp ../dashboard.cmake . | |
| export ROOTSYS=$HOME/software/root/install | |
| export PATH=${ROOTSYS}:${PATH} | |
| source $HOME/software/root/install/bin/thisroot.sh | |
| source $HOME/software/geant4/install/bin/geant4.sh | |
| ctest -S dashboard.cmake -VV | |
| if [ ! $? -eq 0 ]; then | |
| exit 1 | |
| fi | |
| fi | |
| benchmarks: | |
| runs-on: ubuntu-latest | |
| needs: [build] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| strategy_name: [t1_edep_profiles, | |
| t2_edep_vox, | |
| t3_range_e+, | |
| t4_necr, | |
| t6_dpk, | |
| t7_garf, | |
| t8_LETActor, | |
| t10_SpectroGamma, | |
| t11_EMField, | |
| t12_tessellated_volume, | |
| t13_phsp, | |
| t15_optical, | |
| t16_decay, | |
| t17_extended_source, | |
| t18_movement_benchmark, | |
| t19_acollinearity, | |
| t20_digi_adder, | |
| t22_merged_actor, | |
| t23_digi_readout, | |
| t26_CoinSorter, | |
| t27_Hits_2SD, | |
| t28_Singles_2SD, | |
| t29_optical_digi, | |
| t30_dna] | |
| steps: | |
| - name: Checkout github repo | |
| uses: actions/checkout@v3 | |
| with: | |
| lfs: true | |
| - name: Checkout LFS objects | |
| run: git lfs checkout | |
| - name: Checkout submodules | |
| run: git submodule update --init --recursive | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update -qq | |
| sudo apt-get install -y gcc \ | |
| g++ \ | |
| make \ | |
| binutils \ | |
| libx11-dev \ | |
| libxpm-dev \ | |
| libxft-dev \ | |
| libxext-dev \ | |
| qtbase5-dev \ | |
| qt5-qmake \ | |
| git \ | |
| cmake \ | |
| libssl-dev \ | |
| python3.8-dev \ | |
| ccache \ | |
| fftw3-dev | |
| gcc -v | |
| cd | |
| - name: Run the test in docker | |
| run: | | |
| mkdir gate_benchmarks | |
| export GIT_SSL_NO_VERIFY=1 | |
| git clone --recursive https://github.com/OpenGATE/GateBenchmarks.git gate_benchmarks | |
| docker run --rm -e "TEST=${{ matrix.strategy_name }}" -v $GITHUB_WORKSPACE:/src -v $GITHUB_WORKSPACE/gate_benchmarks:/home tbaudier/gatebenchmarks:9.3 /home/.github/workflows/runTest.sh | |