From 8479736a90b9c23956daeb30cf60e66c50720a80 Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 1 Mar 2024 14:12:24 +0000
Subject: [PATCH 1/5] chore(deps): Bump the pipenv group in /services/datalad
 with 11 updates

Bumps the pipenv group in /services/datalad with 11 updates:

| Package | From | To |
| --- | --- | --- |
| [dnspython](https://github.com/rthalley/dnspython) | `2.5.0` | `2.6.1` |
| [falcon](https://github.com/falconry/falcon) | `2.0.0` | `3.1.3` |
| [redis](https://github.com/redis/redis-py) | `5.0.1` | `5.0.2` |
| [gevent](https://github.com/gevent/gevent) | `23.9.1` | `24.2.1` |
| [boto3](https://github.com/boto/boto3) | `1.34.23` | `1.34.53` |
| [elasticsearch](https://github.com/elastic/elasticsearch-py) | `8.12.0` | `8.12.1` |
| [pygit2](https://github.com/libgit2/pygit2) | `1.13.3` | `1.14.1` |
| [pygithub](https://github.com/pygithub/pygithub) | `1.54.1` | `2.2.0` |
| [datalad](https://github.com/datalad/datalad) | `0.18.1` | `0.19.6` |
| [pytest](https://github.com/pytest-dev/pytest) | `7.4.4` | `8.0.2` |
| [coverage](https://github.com/nedbat/coveragepy) | `7.4.0` | `7.4.3` |


Updates `dnspython` from 2.5.0 to 2.6.1
- [Release notes](https://github.com/rthalley/dnspython/releases)
- [Changelog](https://github.com/rthalley/dnspython/blob/main/doc/whatsnew.rst)
- [Commits](https://github.com/rthalley/dnspython/compare/v2.5.0...v2.6.1)

Updates `falcon` from 2.0.0 to 3.1.3
- [Release notes](https://github.com/falconry/falcon/releases)
- [Changelog](https://github.com/falconry/falcon/blob/master/RELEASE.md)
- [Commits](https://github.com/falconry/falcon/compare/2.0.0...3.1.3)

Updates `redis` from 5.0.1 to 5.0.2
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](https://github.com/redis/redis-py/compare/v5.0.1...v5.0.2)

Updates `gevent` from 23.9.1 to 24.2.1
- [Release notes](https://github.com/gevent/gevent/releases)
- [Changelog](https://github.com/gevent/gevent/blob/master/docs/changelog_pre.rst)
- [Commits](https://github.com/gevent/gevent/compare/23.9.1...24.2.1)

Updates `boto3` from 1.34.23 to 1.34.53
- [Release notes](https://github.com/boto/boto3/releases)
- [Changelog](https://github.com/boto/boto3/blob/develop/CHANGELOG.rst)
- [Commits](https://github.com/boto/boto3/compare/1.34.23...1.34.53)

Updates `elasticsearch` from 8.12.0 to 8.12.1
- [Release notes](https://github.com/elastic/elasticsearch-py/releases)
- [Commits](https://github.com/elastic/elasticsearch-py/compare/v8.12.0...v8.12.1)

Updates `pygit2` from 1.13.3 to 1.14.1
- [Changelog](https://github.com/libgit2/pygit2/blob/master/CHANGELOG.md)
- [Commits](https://github.com/libgit2/pygit2/compare/v1.13.3...v1.14.1)

Updates `pygithub` from 1.54.1 to 2.2.0
- [Release notes](https://github.com/pygithub/pygithub/releases)
- [Changelog](https://github.com/PyGithub/PyGithub/blob/main/doc/changes.rst)
- [Commits](https://github.com/pygithub/pygithub/compare/v1.54.1...v2.2.0)

Updates `datalad` from 0.18.1 to 0.19.6
- [Release notes](https://github.com/datalad/datalad/releases)
- [Changelog](https://github.com/datalad/datalad/blob/maint/CHANGELOG.md)
- [Commits](https://github.com/datalad/datalad/compare/0.18.1...0.19.6)

Updates `pytest` from 7.4.4 to 8.0.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.4...8.0.2)

Updates `coverage` from 7.4.0 to 7.4.3
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](https://github.com/nedbat/coveragepy/compare/7.4.0...7.4.3)

---
updated-dependencies:
- dependency-name: dnspython
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pipenv
- dependency-name: falcon
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pipenv
- dependency-name: redis
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: gevent
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pipenv
- dependency-name: boto3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: elasticsearch
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: pipenv
- dependency-name: pygit2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: pipenv
- dependency-name: pygithub
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: pipenv
- dependency-name: datalad
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: pipenv
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: pipenv
- dependency-name: coverage
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: pipenv
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 services/datalad/Pipfile      |   6 +-
 services/datalad/Pipfile.lock | 755 +++++++++++++++++++---------------
 2 files changed, 430 insertions(+), 331 deletions(-)

diff --git a/services/datalad/Pipfile b/services/datalad/Pipfile
index aaedb987b..4ec1680df 100644
--- a/services/datalad/Pipfile
+++ b/services/datalad/Pipfile
@@ -4,7 +4,7 @@ url = "https://pypi.org/simple"
 verify_ssl = true
 
 [dev-packages]
-datalad = "==0.18.1"
+datalad = "==0.19.6"
 pytest = "*"
 coverage = "*"
 mock = "*"
@@ -14,7 +14,7 @@ exceptiongroup = "*"
 
 [packages]
 dnspython = "*"
-falcon = "==2.0.0"
+falcon = "==3.1.3"
 redis = "*"
 requests = "*"
 GitPython = "*"
@@ -26,6 +26,6 @@ falcon-elastic-apm = "*"
 boto3 = "*"
 elasticsearch = "*"
 pygit2 = "*"
-pygithub = "==1.54.1"
+pygithub = "==2.2.0"
 greenlet = "*"
 charset-normalizer = "*"
diff --git a/services/datalad/Pipfile.lock b/services/datalad/Pipfile.lock
index e0ce6cc59..1e62bf5ac 100644
--- a/services/datalad/Pipfile.lock
+++ b/services/datalad/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "0ba5d074cf91405b4bca7bfefb443036978a2062e8673137b037180da96b8a0c"
+            "sha256": "f75ab7f7f9085534068aa41fa354961d939a1d2809f46f0d758b75cee7b2d9fb"
         },
         "pipfile-spec": 6,
         "requires": {},
@@ -14,30 +14,38 @@
         ]
     },
     "default": {
+        "async-timeout": {
+            "hashes": [
+                "sha256:4640d96be84d82d02ed59ea2b7105a0f7b33abe8703703cd0ab0bf87c427522f",
+                "sha256:7405140ff1230c310e51dc27b3145b9092d659ce68ff733fb0cefe3ee42be028"
+            ],
+            "markers": "python_version >= '3.7'",
+            "version": "==4.0.3"
+        },
         "boto3": {
             "hashes": [
-                "sha256:2c96f6a4e9ce2f4d31fc7ab47a2b3a1808063fa3837d7d8548eb2031380f7498",
-                "sha256:364f942d38da283031cde08c46c9282129fd9ebf96fa244f2709886c31ccd49a"
+                "sha256:340c73f57fcca6f503403e2e13a0a4ad44bec218feee2e0896be612324394afd",
+                "sha256:cd30261a782824ce543a628ae524480abb4ca6ab4e4a2631477e48baed43b5f2"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==1.34.23"
+            "version": "==1.34.53"
         },
         "botocore": {
             "hashes": [
-                "sha256:1980411306593bbc2b0cd9b8d1dcacbd418b758077b82f68b932070ad902cfe9",
-                "sha256:898fa169679782f396613f50a88b9b033845625c931275832063266110ea4297"
+                "sha256:3d243781e994dfc5b20036d9fb92672bfaef4dbe388eaa79dae6440ea56c53eb",
+                "sha256:cbbcaddc35738d32df55d26ed5561cf3fa32751a6b22e7e342be87b5e3f55eec"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.34.23"
+            "version": "==1.34.53"
         },
         "certifi": {
             "hashes": [
-                "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1",
-                "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"
+                "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f",
+                "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"
             ],
             "markers": "python_version >= '3.6'",
-            "version": "==2023.11.17"
+            "version": "==2024.2.2"
         },
         "cffi": {
             "hashes": [
@@ -194,6 +202,43 @@
             "markers": "python_full_version >= '3.7.0'",
             "version": "==3.3.2"
         },
+        "cryptography": {
+            "hashes": [
+                "sha256:0270572b8bd2c833c3981724b8ee9747b3ec96f699a9665470018594301439ee",
+                "sha256:111a0d8553afcf8eb02a4fea6ca4f59d48ddb34497aa8706a6cf536f1a5ec576",
+                "sha256:16a48c23a62a2f4a285699dba2e4ff2d1cff3115b9df052cdd976a18856d8e3d",
+                "sha256:1b95b98b0d2af784078fa69f637135e3c317091b615cd0905f8b8a087e86fa30",
+                "sha256:1f71c10d1e88467126f0efd484bd44bca5e14c664ec2ede64c32f20875c0d413",
+                "sha256:2424ff4c4ac7f6b8177b53c17ed5d8fa74ae5955656867f5a8affaca36a27abb",
+                "sha256:2bce03af1ce5a5567ab89bd90d11e7bbdff56b8af3acbbec1faded8f44cb06da",
+                "sha256:329906dcc7b20ff3cad13c069a78124ed8247adcac44b10bea1130e36caae0b4",
+                "sha256:37dd623507659e08be98eec89323469e8c7b4c1407c85112634ae3dbdb926fdd",
+                "sha256:3eaafe47ec0d0ffcc9349e1708be2aaea4c6dd4978d76bf6eb0cb2c13636c6fc",
+                "sha256:5e6275c09d2badf57aea3afa80d975444f4be8d3bc58f7f80d2a484c6f9485c8",
+                "sha256:6fe07eec95dfd477eb9530aef5bead34fec819b3aaf6c5bd6d20565da607bfe1",
+                "sha256:7367d7b2eca6513681127ebad53b2582911d1736dc2ffc19f2c3ae49997496bc",
+                "sha256:7cde5f38e614f55e28d831754e8a3bacf9ace5d1566235e39d91b35502d6936e",
+                "sha256:9481ffe3cf013b71b2428b905c4f7a9a4f76ec03065b05ff499bb5682a8d9ad8",
+                "sha256:98d8dc6d012b82287f2c3d26ce1d2dd130ec200c8679b6213b3c73c08b2b7940",
+                "sha256:a011a644f6d7d03736214d38832e030d8268bcff4a41f728e6030325fea3e400",
+                "sha256:a2913c5375154b6ef2e91c10b5720ea6e21007412f6437504ffea2109b5a33d7",
+                "sha256:a30596bae9403a342c978fb47d9b0ee277699fa53bbafad14706af51fe543d16",
+                "sha256:b03c2ae5d2f0fc05f9a2c0c997e1bc18c8229f392234e8a0194f202169ccd278",
+                "sha256:b6cd2203306b63e41acdf39aa93b86fb566049aeb6dc489b70e34bcd07adca74",
+                "sha256:b7ffe927ee6531c78f81aa17e684e2ff617daeba7f189f911065b2ea2d526dec",
+                "sha256:b8cac287fafc4ad485b8a9b67d0ee80c66bf3574f655d3b97ef2e1082360faf1",
+                "sha256:ba334e6e4b1d92442b75ddacc615c5476d4ad55cc29b15d590cc6b86efa487e2",
+                "sha256:ba3e4a42397c25b7ff88cdec6e2a16c2be18720f317506ee25210f6d31925f9c",
+                "sha256:c41fb5e6a5fe9ebcd58ca3abfeb51dffb5d83d6775405305bfa8715b76521922",
+                "sha256:cd2030f6650c089aeb304cf093f3244d34745ce0cfcc39f20c6fbfe030102e2a",
+                "sha256:cd65d75953847815962c84a4654a84850b2bb4aed3f26fadcc1c13892e1e29f6",
+                "sha256:e4985a790f921508f36f81831817cbc03b102d643b5fcb81cd33df3fa291a1a1",
+                "sha256:e807b3188f9eb0eaa7bbb579b462c5ace579f1cedb28107ce8b48a9f7ad3679e",
+                "sha256:f12764b8fffc7a123f641d7d049d382b73f96a34117e0b637b80643169cec8ac",
+                "sha256:f8837fe1d6ac4a8052a9a8ddab256bc006242696f03368a4009be7ee3075cdb7"
+            ],
+            "version": "==42.0.5"
+        },
         "deprecated": {
             "hashes": [
                 "sha256:6fac8b097794a90302bdbb17b9b815e732d3c4720583ff1b198499d78470466c",
@@ -204,12 +249,12 @@
         },
         "dnspython": {
             "hashes": [
-                "sha256:6facdf76b73c742ccf2d07add296f178e629da60be23ce4b0a9c927b1e02c3a6",
-                "sha256:a0034815a59ba9ae888946be7ccca8f7c157b286f8455b379c692efb51022a15"
+                "sha256:5ef3b9680161f6fa89daf8ad451b5f1a33b18ae8a1c6778cdf4b43f08c0a6e50",
+                "sha256:e8f0f9c23a7b7cb99ded64e6c3a6f3e701d78f50c55e002b839dea7225cff7cc"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==2.5.0"
+            "version": "==2.6.1"
         },
         "ecs-logging": {
             "hashes": [
@@ -238,33 +283,52 @@
         },
         "elasticsearch": {
             "hashes": [
-                "sha256:58fd3876682f7529c33b9eeee701e71cfcc334bb45d725e315e22a0a5e2611fb",
-                "sha256:d394c5ce746bb8cb97827feae57759dae462bce34df221a6fdb6875c56476389"
+                "sha256:00c997720fbd0f2afe5417c8193cf65d116817a0250de0521e30c3e81f00b8ac",
+                "sha256:cc459b7e0fb88dc85b43b9d7d254cffad552b0063a3e0a12290c8fa5f138c038"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.7'",
-            "version": "==8.12.0"
+            "version": "==8.12.1"
         },
         "falcon": {
             "hashes": [
-                "sha256:18157af2a4fc3feedf2b5dcc6196f448639acf01c68bc33d4d5a04c3ef87f494",
-                "sha256:24adcd2b29a8ffa9d552dc79638cd21736a3fb04eda7d102c6cebafdaadb88ad",
-                "sha256:54f2cb4b687035b2a03206dbfc538055cc48b59a953187b0458aa1b574d47b53",
-                "sha256:59d1e8c993b9a37ea06df9d72cf907a46cc8063b30717cdac2f34d1658b6f936",
-                "sha256:733033ec80c896e30a43ab3e776856096836787197a44eb21022320a61311983",
-                "sha256:74cf1d18207381c665b9e6292d65100ce146d958707793174b03869dc6e614f4",
-                "sha256:95bf6ce986c1119aef12c9b348f4dee9c6dcc58391bdd0bc2b0bf353c2b15986",
-                "sha256:9712975adcf8c6e12876239085ad757b8fdeba223d46d23daef82b47658f83a9",
-                "sha256:a5ebb22a04c9cc65081938ee7651b4e3b4d2a28522ea8ec04c7bdd2b3e9e8cd8",
-                "sha256:aa184895d1ad4573fbfaaf803563d02f019ebdf4790e41cc568a330607eae439",
-                "sha256:e3782b7b92fefd46a6ad1fd8fe63fe6c6f1b7740a95ca56957f48d1aee34b357",
-                "sha256:e9efa0791b5d9f9dd9689015ea6bce0a27fcd5ecbcd30e6d940bffa4f7f03389",
-                "sha256:eea593cf466b9c126ce667f6d30503624ef24459f118c75594a69353b6c3d5fc",
-                "sha256:f93351459f110b4c1ee28556aef9a791832df6f910bea7b3f616109d534df06b"
+                "sha256:04a92f159d392098a11d14b8ca71d17129d8b1ef37b7a3577f1f8bcb7b3aecba",
+                "sha256:094d295a767e2aa84f07bec6b23e9ebe2e43cde81d9d583bef037168bd775ad6",
+                "sha256:12432c3f6bce46fe4eec3db6db8d2df1abe43a7531219356f1ba859db207e57b",
+                "sha256:19b2ce8a613a29a9eaf8243ca285ebf80464e8a6489dff60425f850fb5548936",
+                "sha256:1c335f1118a6e42f08cf30d56914a0bc0d470aa6db7619fdc4c546b184f38248",
+                "sha256:23335dbccd44f29e85ec55f2f35d5a0bc12bd7a509f641ab81f5c64b65626263",
+                "sha256:24aa51ba4145f05649976c33664971ef36f92846208bd9d4d4158ceb51bc753f",
+                "sha256:3cda76fb21568aa058ce454fa6272ca5b2582ebb0efcb7ae0090d3bf6d0db5af",
+                "sha256:508fdf30617cf1fa5c9d3058c14124dc8e5f7e316e26dca22d974f916493fd0e",
+                "sha256:51bbbfa1ecb1d50bed9f8ae940b0f1049d958e945f1a08891769d40cfabe6fb2",
+                "sha256:56e8a4728fb0193e2ccd5301d864fd9743a989cc228e709e5c49ff1025cc1a4f",
+                "sha256:57d51f556ece73766f07ede57f17fa65dbbc2cc5e1c7075fb606f727464ad71e",
+                "sha256:656e738e0e220f4503e4f07747b564f4459da159a1f32ec6d2478efb651278dd",
+                "sha256:7471aab646875d4478377065246a4115aaf3c0801a6eb4b6871f9836c8ef60b1",
+                "sha256:796a57046b0717bff5ac488235c37ea63834a5cfc2c9291c5eeaa43c53e5e24c",
+                "sha256:7a1ee54bf19d9c7f998edd8ac21ab8ead1e2f73c24822237eb5485890979a25d",
+                "sha256:7b210c05b38a8d655e16aa3ae2befaa70ecfb49bef73c0c1995566b22afcfdd1",
+                "sha256:8b203408040e87e8323e1c1921b106353fa5fe5dc05c9b3f4881acb3af03f556",
+                "sha256:9c82cb54bbf67861febe80d394c9b7bfa0d2e16cc998b69bfff4e8b003c721a2",
+                "sha256:9e2fe54081f1cedc71462eff8dca074045d14380a4bca163882c6c4353f65af2",
+                "sha256:ad37c46322122f34e228be4fe7ae5fcfedb630eef788a198fbdff5971091d5dc",
+                "sha256:adc23ced91c4690042a11a0515c5cfe93eeeb7d063940900aee85f8eae7460ec",
+                "sha256:c6319883789ee3abcbde2dc10fed8016cc3d9a05018ae59944838b892101111a",
+                "sha256:ca3c6cbcba90e272f60581fb3c4561cdcd0ac6d19672f5a11a04309b1d23fa66",
+                "sha256:cb6b6a79d096b3a1f2f37f66f46a2cf18deb575db6dee9935057e6036d98d01f",
+                "sha256:cbd40435e99255e40ccfa849e4809cd1638fd8eccc08931fc9d355a6840a7332",
+                "sha256:d52a05be5c2ef364853cdc6d97056dd880a534016db73b95f5a6ebc652577533",
+                "sha256:d56d9a9886387585ce4547354c9929bf5743394df04a17df6ed51ad6bb58a4cc",
+                "sha256:d6b7131e85dff13abaacb4ff479c456256f0d57b262b1fb1771180f7535cc902",
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+            "markers": "python_version >= '3.5'",
+            "version": "==3.1.3"
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         "falcon-elastic-apm": {
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@@ -275,50 +339,51 @@
         },
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@@ -444,70 +509,89 @@
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-            "version": "==2.8.2"
+            "version": "==2.9.0"
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@@ -528,11 +612,11 @@
         },
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@@ -550,6 +634,14 @@
             "markers": "python_version >= '3.7'",
             "version": "==5.0.1"
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@@ -648,45 +740,45 @@
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@@ -706,11 +798,11 @@
         },
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@@ -767,16 +859,16 @@
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@@ -871,7 +963,6 @@
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@@ -880,100 +971,109 @@
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@@ -1066,11 +1166,11 @@
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-                "sha256:dd632777ff3beaaf629f1ab4396caf7ba0bdd075d948a69460d13d44357aca4c",
-                "sha256:e45ae4927759289c30ccba8d9fdce62bb414977ba158286b5ddaf8df2cddb5c5",
-                "sha256:e50ebce52f41370707f1e21a59514e3375e3edd6e1832f5e5235237db933c98b",
-                "sha256:ebbbba226f0a108a7366bf4b59bf0f30a12fd5e75100c630267d94d7f0ad20e5",
-                "sha256:ec79ff6159dffcc30853b2ad612ed572af86c92b5168aa3fc01a67b0fa40665e",
-                "sha256:f0936e08e0003f66bfd97e74ee530427707297b0d0361247e9b4f59ab78ddc8b",
-                "sha256:f26a07a6e877c76a88e3cecac8531908d980d3d5067ff69213653649ec0f60ad",
-                "sha256:f64e376cd20d3f030190e8c32e1c64582eba56ac6dc7d5b0b49a9d44021b52fd",
-                "sha256:f6ffbc252eb0d229aeb2f9ad051200668fc3a9aaa8994e49f0cb2ffe2b7867e7",
-                "sha256:f9a7c509542db4eceed3dcf21ee5267ab565a83555c9b88a8109dcecc4709002",
-                "sha256:ff1d0899f104f3921d94579a5638847f783c9b04f2d5f229392ca77fba5b82fc"
+                "sha256:00e073efcba9ea99db5acef3959efa45b52bc67b61b00823d2a1a6944bf45982",
+                "sha256:0726c282d188e204281ebd8de31724b7d749adebc086873a59efb8cf7ae27df3",
+                "sha256:0ceea77719d45c839fd73abcb190b8390412a890df2f83fb8cf49b2a4b5c2f40",
+                "sha256:114be227f5213ef8b215c22dde19532f5da9652e56e8ce969bf0a26d7c419fee",
+                "sha256:13577ec9e247f8741c84d06b9ece5f654920d8365a4b636ce0e44f15e07ec693",
+                "sha256:1876b0b653a808fcd50123b953af170c535027bf1d053b59790eebb0aeb38950",
+                "sha256:1ab0bbcd4d1f7b6991ee7c753655b481c50084294218de69365f8f1970d4c151",
+                "sha256:1cce488457370ffd1f953846f82323cb6b2ad2190987cd4d70b2713e17268d24",
+                "sha256:24f727df1e20b9876fa6e95f840a2a2651e34c0ad147676356f4bf5fbb0206ca",
+                "sha256:26ee97a8261e6e35885c2ecd2fd4a6d38252246f94a2aec23665a4e66d066305",
+                "sha256:3528807cbbb7f315bb81959d5961855e7ba52aa60a3097151cb21956fbc7502b",
+                "sha256:374a8e88ddab84b9ada695d255679fb99c53513c0a51778796fcf0944d6c789c",
+                "sha256:376081f471a2ef24828b83a641a02c575d6103a3ad7fd7dade5486cad10ea659",
+                "sha256:3923a1778f7e5ef31865893fdca12a8d7dc03a44b33e2a5f3295416314c09f5d",
+                "sha256:4916727e31c28be8beaf11cf117d6f6f188dcc36daae4e851fee88646f5b6b18",
+                "sha256:493c5c5e44b06d6c9268ce21b302c9ca055c1fd3484c25ba41d34476c76ee746",
+                "sha256:505fe3d03856ac7d215dbe005414bc28505d26f0c128906037e66d98c4e95868",
+                "sha256:5845fdf5e5d5b78a49b826fcdc0eb2e2aa7191980e3d2cfd2a30303a74f212e2",
+                "sha256:5c330eace3dd100bdb54b5653b966de7f51c26ec4a7d4e87132d9b4f738220ba",
+                "sha256:5dbf059fb4b7c240c873c1245ee112505be27497e90f7c6591261c7d3c3a8228",
+                "sha256:5e390971d082dba073c05dbd56322427d3280b7cc8b53484c9377adfbae67dc2",
+                "sha256:5fbb160554e319f7b22ecf530a80a3ff496d38e8e07ae763b9e82fadfe96f273",
+                "sha256:64d0fcd436c5683fdd7c907eeae5e2cbb5eb872fafbc03a43609d7941840995c",
+                "sha256:69284049d07fce531c17404fcba2bb1df472bc2dcdac642ae71a2d079d950653",
+                "sha256:6a0e76621f6e1f908ae52860bdcb58e1ca85231a9b0545e64509c931dd34275a",
+                "sha256:73ee792784d48aa338bba28063e19a27e8d989344f34aad14ea6e1b9bd83f596",
+                "sha256:74398a4cf19de42e1498368c36eed45d9528f5fd0155241e82c4082b7e16cffd",
+                "sha256:7938111ed1358f536daf311be244f34df7bf3cdedb3ed883787aca97778b28d8",
+                "sha256:82d92c773fbc6942a7a8b520d22c11cfc8fd83bba86116bfcf962c2f5c2ecdaa",
+                "sha256:83b5c044f3eff2a6534768ccfd50425939e7a8b5cf9a7261c385de1e20dcfc85",
+                "sha256:8db8e423192303ed77cff4dce3a4b88dbfaf43979d280181558af5e2c3c71afc",
+                "sha256:9517004e21664f2b5a5fd6333b0731b9cf0817403a941b393d89a2f1dc2bd836",
+                "sha256:99881222f4a8c2f641f25703963a5cefb076adffd959e0558dc9f803a52d6a58",
+                "sha256:9ee32dcb8e531adae1f1ca568822e9b3a738369b3b686d1477cbc643c4a9c128",
+                "sha256:a22e47578b30a3e199ab067a4d43d790249b3c0587d9a771921f86250c8435db",
+                "sha256:b5505774ea2a73a86ea176e8a9a4a7c8bf5d521050f0f6f8426afe798689243f",
+                "sha256:bd739c9251d01e0279ce729e37b39d49a08c0420d3fee7f2a4968c0576678f77",
+                "sha256:d16a786905034e7e34098634b184a7d81f91d4c3d246edc6bd7aefb2fd8ea6ad",
+                "sha256:d3420522057ebab1728b21ad473aa950026d07cb09da41103f8e597dfbfaeb13",
+                "sha256:d56fd9f1f1cdc8227d7b7918f55091349741904d9520c65f0139a9755952c9e8",
+                "sha256:d661dc4785affa9d0edfdd1e59ec056a58b3dbb9f196fa43587f3ddac654ac7b",
+                "sha256:dfe1f0f0ed5785c187144c46a292b8c34c1295c01da12e10ccddfc16def4448a",
+                "sha256:e1dd7839443592d00e96db831eddb4111a2a81a46b028f0facd60a09ebbdd543",
+                "sha256:e2872993e209f7ed04d963e4b4fbae72d034844ec66bc4ca403329db2074377b",
+                "sha256:e2f879ab92ce502a1e65fce390eab619774dda6a6ff719718069ac94084098ce",
+                "sha256:e3aa7e51d738e0ec0afbed661261513b38b3014754c9459508399baf14ae0c9d",
+                "sha256:e532dbd6ddfe13946de050d7474e3f5fb6ec774fbb1a188aaf469b08cf04189a",
+                "sha256:e6b7842518a63a9f17107eb176320960ec095a8ee3b4420b5f688e24bf50c53c",
+                "sha256:e75753aeda0ddc4c28dce4c32ba2f6ec30b1b02f6c0b14e547841ba5b24f753f",
+                "sha256:eadb9f826c138e6cf3c49d6f8de88225a3c0ab181a9b4ba792e006e5292d150e",
+                "sha256:ed59dd52075f8fc91da6053b12e8c89e37aa043f8986efd89e61fae69dc1b011",
+                "sha256:ef254a06bcea461e65ff0373d8a0dd1ed3aa004af48839f002a0c994a6f72d04",
+                "sha256:f3709997b228685fe53e8c433e2df9f0cdb5f4542bd5114ed17ac3c0129b0480",
+                "sha256:f51bab98d52739c50c56658cc303f190785f9a2cd97b823357e7aeae54c8f68a",
+                "sha256:f9904e24646570539a8950400602d66d2b2c492b9010ea7e965025cb71d0c86d",
+                "sha256:f9af38a89b6a5c04b7d18c492c8ccf2aee7048aff1ce8437c4683bb5a1df893d"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.0.7"
+            "version": "==1.0.8"
         },
         "packaging": {
             "hashes": [
@@ -1177,27 +1277,27 @@
         },
         "patool": {
             "hashes": [
-                "sha256:046db47d262c44cc7991e8c41dbfa81d9dbe6a5dbfc09b1636670364a260f539",
-                "sha256:be32c010fb2808130b96bead18e9772564298088746982833140c1b76b95a293"
+                "sha256:21db6cc2fcd77acd37768258d1ad5aa3df0f676331fd80dfb1eb628626bc9155",
+                "sha256:7767a747b24fbaa6ecc53579debc18358b6bc792ddb57e0669784c5b29af4a73"
             ],
             "markers": "python_version >= '3.10'",
-            "version": "==2.1.0"
+            "version": "==2.2.0"
         },
         "platformdirs": {
             "hashes": [
-                "sha256:11c8f37bcca40db96d8144522d925583bdb7a31f7b0e37e3ed4318400a8e2380",
-                "sha256:906d548203468492d432bcb294d4bc2fff751bf84971fbb2c10918cc206ee420"
+                "sha256:0614df2a2f37e1a662acbd8e2b25b92ccf8632929bc6d43467e17fe89c75e068",
+                "sha256:ef0cc731df711022c174543cb70a9b5bd22e5a9337c8624ef2c2ceb8ddad8768"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==4.1.0"
+            "version": "==4.2.0"
         },
         "pluggy": {
             "hashes": [
-                "sha256:cf61ae8f126ac6f7c451172cf30e3e43d3ca77615509771b3a984a0730651e12",
-                "sha256:d89c696a773f8bd377d18e5ecda92b7a3793cbe66c87060a6fb58c7b6e1061f7"
+                "sha256:7db9f7b503d67d1c5b95f59773ebb58a8c1c288129a88665838012cfb07b8981",
+                "sha256:8c85c2876142a764e5b7548e7d9a0e0ddb46f5185161049a79b7e974454223be"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.3.0"
+            "version": "==1.4.0"
         },
         "pycparser": {
             "hashes": [
@@ -1208,12 +1308,12 @@
         },
         "pytest": {
             "hashes": [
-                "sha256:2cf0005922c6ace4a3e2ec8b4080eb0d9753fdc93107415332f50ce9e7994280",
-                "sha256:b090cdf5ed60bf4c45261be03239c2c1c22df034fbffe691abe93cd80cea01d8"
+                "sha256:d4051d623a2e0b7e51960ba963193b09ce6daeb9759a451844a21e4ddedfc1bd",
+                "sha256:edfaaef32ce5172d5466b5127b42e0d6d35ebbe4453f0e3505d96afd93f6b096"
             ],
             "index": "pypi",
-            "markers": "python_version >= '3.7'",
-            "version": "==7.4.4"
+            "markers": "python_version >= '3.8'",
+            "version": "==8.0.2"
         },
         "pytest-cov": {
             "hashes": [
@@ -1246,7 +1346,6 @@
                 "sha256:58cd2187c01e70e6e26505bca751777aa9f2ee0b7f4300988b709f44e013003f",
                 "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"
             ],
-            "index": "pypi",
             "markers": "python_version >= '3.7'",
             "version": "==2.31.0"
         },
@@ -1268,19 +1367,19 @@
         },
         "tqdm": {
             "hashes": [
-                "sha256:d302b3c5b53d47bce91fea46679d9c3c6508cf6332229aa1e7d8653723793386",
-                "sha256:d88e651f9db8d8551a62556d3cff9e3034274ca5d66e93197cf2490e2dcb69c7"
+                "sha256:1ee4f8a893eb9bef51c6e35730cebf234d5d0b6bd112b0271e10ed7c24a02bd9",
+                "sha256:6cd52cdf0fef0e0f543299cfc96fec90d7b8a7e88745f411ec33eb44d5ed3531"
             ],
             "markers": "python_version >= '3.7'",
-            "version": "==4.66.1"
+            "version": "==4.66.2"
         },
         "urllib3": {
             "hashes": [
-                "sha256:c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84",
-                "sha256:fdb6d215c776278489906c2f8916e6e7d4f5a9b602ccbcfdf7f016fc8da0596e"
+                "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d",
+                "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"
             ],
-            "markers": "python_version >= '3.7'",
-            "version": "==2.0.7"
+            "markers": "python_version >= '3.8'",
+            "version": "==2.2.1"
         },
         "zipp": {
             "hashes": [

From 6ebc25612614369a8d0daa036341f237df97939a Mon Sep 17 00:00:00 2001
From: Chris Markiewicz <effigies@gmail.com>
Date: Fri, 1 Mar 2024 09:27:52 -0500
Subject: [PATCH 2/5] fix(pyjwt): jwt.encode() returns a str as of v2.0

---
 services/datalad/tests/test_draft.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/services/datalad/tests/test_draft.py b/services/datalad/tests/test_draft.py
index ea6eba03d..295ea9673 100644
--- a/services/datalad/tests/test_draft.py
+++ b/services/datalad/tests/test_draft.py
@@ -18,7 +18,7 @@ def test_add_commit_info(client):
     }
     jwt_secret = 'shhhhh'
     os.environ['JWT_SECRET'] = jwt_secret
-    access_token = jwt.encode(user, jwt_secret).decode('utf-8')
+    access_token = jwt.encode(user, jwt_secret)
     cookie = 'accessToken={}'.format(access_token)
     headers = {
         'Cookie': cookie

From 2c74bbd1416079cd435319f090c1732224cb017a Mon Sep 17 00:00:00 2001
From: Chris Markiewicz <effigies@gmail.com>
Date: Fri, 1 Mar 2024 09:33:35 -0500
Subject: [PATCH 3/5] chore(pipenv): Lock pyjwt lower bound

---
 services/datalad/Pipfile      |  2 +-
 services/datalad/Pipfile.lock | 41 ++++++++++++++++++++++++-----------
 2 files changed, 29 insertions(+), 14 deletions(-)

diff --git a/services/datalad/Pipfile b/services/datalad/Pipfile
index 4ec1680df..ce223aa5b 100644
--- a/services/datalad/Pipfile
+++ b/services/datalad/Pipfile
@@ -18,7 +18,7 @@ falcon = "==3.1.3"
 redis = "*"
 requests = "*"
 GitPython = "*"
-PyJWT = "*"
+PyJWT = ">=2"
 gunicorn = "*"
 gevent = "*"
 elastic-apm = "*"
diff --git a/services/datalad/Pipfile.lock b/services/datalad/Pipfile.lock
index 1e62bf5ac..cafa22a71 100644
--- a/services/datalad/Pipfile.lock
+++ b/services/datalad/Pipfile.lock
@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "f75ab7f7f9085534068aa41fa354961d939a1d2809f46f0d758b75cee7b2d9fb"
+            "sha256": "65c2d3d5babdf87629a15a9a7d1f7c00a3ef18e10b0ac93d343800f9f266decd"
         },
         "pipfile-spec": 6,
         "requires": {},
@@ -395,12 +395,11 @@
         },
         "gitpython": {
             "hashes": [
-                "sha256:c36b6634d069b3f719610175020a9aed919421c87552185b085e04fbbdb10b7c",
-                "sha256:ed66e624884f76df22c8e16066d567aaa5a37d5b5fa19db2c6df6f7156db9048"
+                "sha256:1bf9cd7c9e7255f77778ea54359e54ac22a72a5b51288c457c881057b7bb9ecd",
+                "sha256:2d99869e0fef71a73cbd242528105af1d6c1b108c60dfabd994bf292f76c3ceb"
             ],
-            "index": "pypi",
             "markers": "python_version >= '3.7'",
-            "version": "==3.1.41"
+            "version": "==3.1.42"
         },
         "greenlet": {
             "hashes": [
@@ -556,7 +555,6 @@
                 "sha256:57e28d156e3d5c10088e0c68abb90bfac3df82b40a71bd0daa20c65ccd5c23de",
                 "sha256:59127c392cc44c2da5bb3192169a91f429924e17aff6534d70fdc02ab3e04320"
             ],
-            "index": "pypi",
             "markers": "python_version >= '3.7'",
             "version": "==2.8.0"
         },
@@ -615,7 +613,7 @@
                 "sha256:02fa291a0471b3a18b2b2481ed902af520c69e8ae0919c13da936542754b4c56",
                 "sha256:5c0806c7d9af348e6dd3777b4f4dbb42c7ad85b190104837488eab9a7c945cf8"
             ],
-            "markers": "python_version >= '3.12'",
+            "markers": "python_version >= '3.8'",
             "version": "==69.1.1"
         },
         "six": {
@@ -859,7 +857,7 @@
                 "sha256:fa3a0128b152627161ce47201262d3140edb5a5c3da88d73a1b790a959126956",
                 "sha256:fcc8eb6d5902bb1cf6dc4f187ee3ea80a1eba0a89aba40a5cb20a5087d961357"
             ],
-            "markers": "platform_python_implementation != 'PyPy'",
+            "markers": "python_version >= '3.8'",
             "version": "==1.16.0"
         },
         "chardet": {
@@ -963,6 +961,7 @@
                 "sha256:fd1abc0d89e30cc4e02e4064dc67fcc51bd941eb395c502aac3ec19fab46b519",
                 "sha256:ff8fa367d09b717b2a17a052544193ad76cd49979c805768879cb63d9ca50561"
             ],
+            "index": "pypi",
             "markers": "python_full_version >= '3.7.0'",
             "version": "==3.3.2"
         },
@@ -1063,7 +1062,6 @@
                 "sha256:f12764b8fffc7a123f641d7d049d382b73f96a34117e0b637b80643169cec8ac",
                 "sha256:f8837fe1d6ac4a8052a9a8ddab256bc006242696f03368a4009be7ee3075cdb7"
             ],
-            "markers": "python_version >= '3.7'",
             "version": "==42.0.5"
         },
         "datalad": {
@@ -1346,6 +1344,7 @@
                 "sha256:58cd2187c01e70e6e26505bca751777aa9f2ee0b7f4300988b709f44e013003f",
                 "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"
             ],
+            "index": "pypi",
             "markers": "python_version >= '3.7'",
             "version": "==2.31.0"
         },
@@ -1365,6 +1364,14 @@
             "markers": "sys_platform == 'linux'",
             "version": "==3.3.3"
         },
+        "tomli": {
+            "hashes": [
+                "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc",
+                "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"
+            ],
+            "markers": "python_version < '3.11'",
+            "version": "==2.0.1"
+        },
         "tqdm": {
             "hashes": [
                 "sha256:1ee4f8a893eb9bef51c6e35730cebf234d5d0b6bd112b0271e10ed7c24a02bd9",
@@ -1373,13 +1380,21 @@
             "markers": "python_version >= '3.7'",
             "version": "==4.66.2"
         },
-        "urllib3": {
+        "typing-extensions": {
             "hashes": [
-                "sha256:450b20ec296a467077128bff42b73080516e71b56ff59a60a02bef2232c4fa9d",
-                "sha256:d0570876c61ab9e520d776c38acbbb5b05a776d3f9ff98a5c8fd5162a444cf19"
+                "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475",
+                "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==2.2.1"
+            "version": "==4.10.0"
+        },
+        "urllib3": {
+            "hashes": [
+                "sha256:c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84",
+                "sha256:fdb6d215c776278489906c2f8916e6e7d4f5a9b602ccbcfdf7f016fc8da0596e"
+            ],
+            "markers": "python_version >= '3.7'",
+            "version": "==2.0.7"
         },
         "zipp": {
             "hashes": [

From 6a74ca09b8a9f123261e6a2b59b128e770f244c2 Mon Sep 17 00:00:00 2001
From: Chris Markiewicz <effigies@gmail.com>
Date: Fri, 1 Mar 2024 09:35:02 -0500
Subject: [PATCH 4/5] fix(falcon): Use set_stream() method over deprecated
 property setters

---
 services/datalad/datalad_service/handlers/annex.py | 3 +--
 services/datalad/datalad_service/handlers/files.py | 3 +--
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/services/datalad/datalad_service/handlers/annex.py b/services/datalad/datalad_service/handlers/annex.py
index d4723552c..28f243a76 100644
--- a/services/datalad/datalad_service/handlers/annex.py
+++ b/services/datalad/datalad_service/handlers/annex.py
@@ -55,8 +55,7 @@ def on_get(self, req, resp, dataset, key, worker=None):
         if os.path.exists(annex_object_path):
             resp.status = falcon.HTTP_OK
             fd = open(annex_object_path, 'rb')
-            resp.stream = fd
-            resp.stream_len = os.fstat(fd.fileno()).st_size
+            resp.set_stream(fd, os.fstat(fd.fileno()).st_size)
         else:
             resp.status = falcon.HTTP_NOT_FOUND
 
diff --git a/services/datalad/datalad_service/handlers/files.py b/services/datalad/datalad_service/handlers/files.py
index 1b7d505e3..6e6354588 100644
--- a/services/datalad/datalad_service/handlers/files.py
+++ b/services/datalad/datalad_service/handlers/files.py
@@ -29,8 +29,7 @@ def on_get(self, req, resp, dataset, filename, snapshot='HEAD'):
                     # Verify the annex path is within the dataset dir
                     if ds_path == os.path.commonpath((ds_path, target_path)):
                         fd = open(target_path, 'rb')
-                        resp.stream = fd
-                        resp.stream_len = os.fstat(fd.fileno()).st_size
+                        resp.set_stream(fd, os.fstat(fd.fileno()).st_size)
                         resp.status = falcon.HTTP_OK
                     else:
                         resp.media = {'error': 'file not found in git tree'}

From 353e3f6facb2a22bbab3d8ae214f91841ee4e110 Mon Sep 17 00:00:00 2001
From: Chris Markiewicz <effigies@gmail.com>
Date: Fri, 1 Mar 2024 10:10:29 -0500
Subject: [PATCH 5/5] fix(falcon): Use req.get_media(None) to handle missing
 data

---
 services/datalad/datalad_service/handlers/snapshots.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/services/datalad/datalad_service/handlers/snapshots.py b/services/datalad/datalad_service/handlers/snapshots.py
index 6d8abcbd2..6b3f67d3a 100644
--- a/services/datalad/datalad_service/handlers/snapshots.py
+++ b/services/datalad/datalad_service/handlers/snapshots.py
@@ -43,7 +43,7 @@ def on_get(self, req, resp, dataset, snapshot=None):
 
     def on_post(self, req, resp, dataset, snapshot):
         """Commit a revision (snapshot) from the working tree."""
-        media = req.media
+        media = req.get_media(None)
         description_fields = {}
         snapshot_changes = []
         skip_publishing = False