From 53e5b536f08329371c709e60755878f231913050 Mon Sep 17 00:00:00 2001 From: skchronicles Date: Thu, 20 Jun 2024 15:39:00 -0400 Subject: [PATCH] Patch: Updating family table option. --- workflow/rules/paired-end.smk | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/rules/paired-end.smk b/workflow/rules/paired-end.smk index a9043e2..f85d6be 100644 --- a/workflow/rules/paired-end.smk +++ b/workflow/rules/paired-end.smk @@ -1013,7 +1013,7 @@ rule merge_telescope: rmerger=join("workflow", "scripts", "telescope_count_merge.R"), outdir=join(workpath, telescope_dir), mode=mode, - ervs_fam_table = lambda _: "--family_table {0}".format( + ervs_fam_table = lambda _: "-f {0}".format( config['references']['rnaseq']['ERVS_FAMILY_ANNOTATION_TABLE'] ) if config['references']['rnaseq']['ERVS_FAMILY_ANNOTATION_TABLE'] else ""