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running jnml -netpyne results in error related to non0-1 parentFractionAlong #24

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JustasB opened this issue Jan 27, 2018 · 0 comments
Open

running jnml -netpyne results in error related to non0-1 parentFractionAlong #24

JustasB opened this issue Jan 27, 2018 · 0 comments

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@JustasB
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JustasB commented Jan 27, 2018

Granule cells have several segments with parentFraction along being non 0 or 1.

For example: https://github.com/JustasB/MiglioreEtAl14_OlfactoryBulb3D/blob/master/NeuroML2/GranuleCells/Exported/Granule_0_110821.cell.nml

When they are included in a LEMS file, running the netpyne converted .py file results in the following error:

in: netpyne\neuromlFuncs.py, 810

fract = float(seg.parent.fraction_along)
assert(fract==1.0 or fract==0.0)

It appears to be related to these two fractionAlong issues: NeuroML/org.neuroml.export#46
NeuroML/pyNeuroML#22
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@JustasB