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3 changes: 3 additions & 0 deletions ch-workstation.md
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Expand Up @@ -140,6 +140,8 @@ Productivity in VS Code is enhanced with the following extensions: {added Dec 2

* [markdownlint](https://marketplace.visualstudio.com/items?itemName=DavidAnson.vscode-markdownlint) has linting and style checking.

* [Select Compare Tabs](https://marketplace.visualstudio.com/items?itemName=outofsync42.select-compare-tabs) quickly produces diffs between tabs.

These extensions [can be installed by command line](https://code.visualstudio.com/docs/editor/command-line#_working-with-extensions).

```sh
Expand All @@ -151,6 +153,7 @@ code --install-extension streetsidesoftware.code-spell-checker
code --install-extension yzhang.markdown-all-in-one
code --install-extension yzane.markdown-pdf
code --install-extension DavidAnson.vscode-markdownlint
code --install-extension outofsync42.select-compare-tabs
```

Note: here are some non-default changes that facilitate our workflow. Either copy this configuration into [`settings.json`](https://code.visualstudio.com/docs/getstarted/tips-and-tricks#_tune-your-settings), or manually specify the options with the [settings editor](https://code.visualstudio.com/docs/getstarted/settings).
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<footer class="bg-primary text-light mt-5"><div class="container"><div class="row">

<div class="col-12 col-md-6 mt-3">
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<footer class="bg-primary text-light mt-5"><div class="container"><div class="row">

<div class="col-12 col-md-6 mt-3">
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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Expand Up @@ -140,6 +140,8 @@ Productivity in VS Code is enhanced with the following extensions: {added Dec 2

* [markdownlint](https://marketplace.visualstudio.com/items?itemName=DavidAnson.vscode-markdownlint) has linting and style checking.

* [Select Compare Tabs](https://marketplace.visualstudio.com/items?itemName=outofsync42.select-compare-tabs) quickly produces diffs between tabs.

These extensions [can be installed by command line](https://code.visualstudio.com/docs/editor/command-line#_working-with-extensions).

```sh
Expand All @@ -151,6 +153,7 @@ code --install-extension streetsidesoftware.code-spell-checker
code --install-extension yzhang.markdown-all-in-one
code --install-extension yzane.markdown-pdf
code --install-extension DavidAnson.vscode-markdownlint
code --install-extension outofsync42.select-compare-tabs
```

Note: here are some non-default changes that facilitate our workflow. Either copy this configuration into [`settings.json`](https://code.visualstudio.com/docs/getstarted/tips-and-tricks#_tune-your-settings), or manually specify the options with the [settings editor](https://code.visualstudio.com/docs/getstarted/settings).
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<p><strong><a href="https://stat.ethz.ch/R-manual/R-devel/library/base/html/cut.html"><code>base::cut()</code></a></strong>: The function transforms a single numeric variable into a factor. Its range is cut into different segments/categories on the one-dimensional number line. The output branches to single discrete value (either a factor-level or an integer). Modify the <code>right</code> parameter to <code>FALSE</code> if you’d like the left/lower bound to be inclusive (which tends to be more natural for me).</p>
<div class="sourceCode" id="cb10"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span>
<span> <span class="fu">tibble</span><span class="fu">::</span><span class="fu"><a href="https://tibble.tidyverse.org/reference/as_tibble.html">as_tibble</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span>
<span> <span class="fu">tibble</span><span class="fu">::</span><span class="fu">as_tibble</span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span>
<span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu">select</span><span class="op">(</span></span>
<span> <span class="va">disp</span>,</span>
<span> <span class="op">)</span> <span class="op">|&gt;</span></span>
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<p>The following snippet asserts it’s acceptable that 2% of patients are missing an age, but it should never get worse than 5%. Therefore it throws an error when the missingness exceeds 5% and it throws an warning if it exceeds 2%.</p>
<div class="sourceCode" id="cb19"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="co"># Simulate a vector of ages.</span></span>
<span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu">tibble</span><span class="fu">::</span><span class="fu"><a href="https://tibble.tidyverse.org/reference/tibble.html">tibble</a></span><span class="op">(</span></span>
<span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu">tibble</span><span class="fu">::</span><span class="fu">tibble</span><span class="op">(</span></span>
<span> age <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html">c</a></span><span class="op">(</span><span class="cn">NA</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">19</span><span class="op">)</span>, size <span class="op">=</span> <span class="fl">100</span>, replace <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
<span><span class="op">)</span></span>
<span></span>
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<footer class="bg-primary text-light mt-5"><div class="container"><div class="row">

<div class="col-12 col-md-6 mt-3">
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
</div>

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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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---
title: "Collaborative Data Science Practices"
author: "Will Beasley"
date: "2024-01-22"
date: "2024-02-11"
site: bookdown::bookdown_site
documentclass: book
bibliography: [book.bib, packages.bib]
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<span><span class="op">}</span></span>
<span></span>
<span><span class="va">ds_pt_pool</span> <span class="op">&lt;-</span></span>
<span> <span class="fu">tibble</span><span class="fu">::</span><span class="fu"><a href="https://tibble.tidyverse.org/reference/tibble.html">tibble</a></span><span class="op">(</span></span>
<span> <span class="fu">tibble</span><span class="fu">::</span><span class="fu">tibble</span><span class="op">(</span></span>
<span> pt_index <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html">seq_len</a></span><span class="op">(</span><span class="va">pt_count</span><span class="op">)</span>,</span>
<span> pt_tag <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html">vapply</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/rep.html">rep</a></span><span class="op">(</span><span class="va">tag_length</span>, <span class="va">pt_count</span><span class="op">)</span>, <span class="va">draw_tag</span>, <span class="fu"><a href="https://rdrr.io/r/base/character.html">character</a></span><span class="op">(</span><span class="fl">1</span><span class="op">)</span><span class="op">)</span>,</span>
<span> assigned <span class="op">=</span> <span class="cn">FALSE</span>,</span>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-01-22.</p>
<p>"<strong>Collaborative Data Science Practices</strong>" was written by Will Beasley. It was last built on 2024-02-11.</p>
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