diff --git a/CHANGELOG.md b/CHANGELOG.md index c3f46ea6..4b6f44d1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,62 @@ ## 0.1 series +### 0.1.27 + +Features: +* Added method to check if measurement time is at steady-state by @dilpath in + https://github.com/PEtab-dev/libpetab-python/pull/124 +* Create dummy simulation conditions dataframe for empty measurements by + @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/127 +* Validator: Report empty noiseFormula by @dweindl in + https://github.com/PEtab-dev/libpetab-python/pull/134 +* Speedup visspec assembly / fix deprecation warning by @dweindl in + https://github.com/PEtab-dev/libpetab-python/pull/135 +* Handle incomplete PEtab problems in `petab.Problem.from_yaml` by @dweindl in + https://github.com/PEtab-dev/libpetab-python/pull/138 +* Argument forwarding for + `Problem.get_optimization_to_simulation_parameter_mapping` by @dweindl in + https://github.com/PEtab-dev/libpetab-python/pull/159 +* Added candidate schema for version 2 by @dweindl in + https://github.com/PEtab-dev/libpetab-python/pull/142 +* `get_parameter_df`: Allow any collection of parameter tables by @dweindl in + https://github.com/PEtab-dev/libpetab-python/pull/153, + @m-philipps in https://github.com/PEtab-dev/libpetab-python/pull/156, + @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/157 +* Updated visualization example notebooks + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/137, + by @plakrisenko in https://github.com/PEtab-dev/libpetab-python/pull/146, + by @plakrisenko in https://github.com/PEtab-dev/libpetab-python/pull/147 +* Added support for PEtab problems with multiple condition files + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/152 +* Added abstraction for (SBML) models by @dweindl in + https://github.com/PEtab-dev/libpetab-python/pull/133 + +Fixes: +* Apply get table method before write table method to ensure correct index + by @dilpath in https://github.com/PEtab-dev/libpetab-python/pull/126 +* petablint: Fix incorrect noise-parameter-mismatch error message + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/129 +* Fixed handling of NaN values for parameters in condition table + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/150 +* More informative `petab.calculate` errors + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/151 + +Removals: +* Removed ancient/deprecated default file naming scheme + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/132 +* Removed ancient deprecated functions related to specifying observables/noise + models inside SBML + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/140 + https://github.com/PEtab-dev/libpetab-python/pull/131 +* Removed deprecated visualization functions + by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/130 + +**New Contributors** +* @m-philipps made their first contribution in https://github.com/PEtab-dev/libpetab-python/pull/156 + +**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.1.26...v0.1.27 + ### 0.1.26 * Fix SBML Rule handling logic by @dweindl in diff --git a/petab/version.py b/petab/version.py index 5d1c5ae0..266c1c69 100644 --- a/petab/version.py +++ b/petab/version.py @@ -1,2 +1,2 @@ """PEtab library version""" -__version__ = '0.1.26' +__version__ = '0.1.27.dev1'