libpetab-python v0.1.27
Features:
- Added method to check if measurement time is at steady-state by @dilpath in #124
- Create dummy simulation conditions dataframe for empty measurements by @dilpath in #127
- Validator: Report empty noiseFormula by @dweindl in #134
- Speedup visspec assembly / fix deprecation warning by @dweindl in #135
- Handle incomplete PEtab problems in
petab.Problem.from_yaml
by @dweindl in #138 - Argument forwarding for
Problem.get_optimization_to_simulation_parameter_mapping
by @dweindl in #159 - Added candidate schema for version 2 by @dweindl in #142
get_parameter_df
: Allow any collection of parameter tables by @dweindl in #153, @m-philipps in #156, @dilpath in #157- Updated visualization example notebooks by @dweindl in #137, by @plakrisenko in #146, by @plakrisenko in #147
- Added support for PEtab problems with multiple condition files by @dweindl in #152
- Added abstraction for (SBML) models by @dweindl in #133
Fixes:
- Apply get table method before write table method to ensure correct index by @dilpath in #126
- petablint: Fix incorrect noise-parameter-mismatch error message by @dweindl in #129
- Fixed handling of NaN values for parameters in condition table by @dweindl in #150
- More informative
petab.calculate
errors by @dweindl in #151
Removals:
- Removed ancient/deprecated default file naming scheme by @dweindl in #132
- Removed ancient deprecated functions related to specifying observables/noise models inside SBML
by @dweindl in #140 #131 - Removed deprecated visualization functions by @dweindl in #130
New Contributors
- @m-philipps made their first contribution in #156
Full Changelog: v0.1.26...v0.1.27