DeepRVAT 🧬🧪💻🧑🔬 #272
Workflow file for this run
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| name: DeepRVAT | |
| run-name: DeepRVAT 🧬🧪💻🧑🔬 | |
| on: [ push ] | |
| jobs: | |
| DeepRVAT-Annotation-Pipeline-Smoke-Tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Annotations Smoke Test | |
| uses: snakemake/snakemake-github-action@v1.25.1 | |
| with: | |
| directory: 'example/annotations' | |
| snakefile: 'pipelines/annotations.snakefile' | |
| args: '-j 2 -n --configfile pipelines/config/deeprvat_annotation_config.yaml' | |
| stagein: 'mkdir -vp reference && touch reference/hg38.fa' |