test-runner.yml

name: DeepRVAT test runner
run-name: DeepRVAT Tests 🧑🏼‍💻✅
on: [ push, pull_request ]

jobs:
  DeepRVAT-Tests-Runner:
    runs-on: ubuntu-latest
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4
      - uses: mamba-org/setup-micromamba@v1.8.0
        with:
          environment-name: deeprvat-preprocess-gh-action
          environment-file: ${{ github.workspace }}/deeprvat_env_no_gpu.yml
          cache-environment: true
          cache-downloads: true

      - name: Install DeepRVAT
        run: pip install -e ${{ github.workspace }}
        shell: micromamba-shell {0}
      - name: Run pytest deeprvat
        run: pytest -v ${{ github.workspace }}/tests/deeprvat
        shell: micromamba-shell {0}

  DeepRVAT-Tests-Runner-Preprocessing:
    runs-on: ubuntu-latest
    steps:

      - name: Check out repository code
        uses: actions/checkout@v4
      - uses: mamba-org/setup-micromamba@v1.8.0
        with:
          environment-name: deeprvat-preprocess-gh-action
          environment-file: ${{ github.workspace }}/deeprvat_preprocessing_env.yml
          cache-environment: true
          cache-downloads: true

      - name: Install DeepRVAT
        run: pip install -e ${{ github.workspace }}
        shell: micromamba-shell {0}

      - name: Run pytest preprocessing
        run: pytest -v ${{ github.workspace }}/tests/preprocessing
        shell: micromamba-shell {0}