n_avg_chunks = 1

PMBio · May 13, 2024 · 07cfe7b · 07cfe7b
1 parent 45064d8
commit 07cfe7b
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/pipelines/association_testing_pretrained.snakefile b/pipelines/association_testing_pretrained.snakefile
@@ -9,7 +9,7 @@ training_phenotypes = config["training"].get("phenotypes", phenotypes)
 
 n_burden_chunks = config.get('n_burden_chunks', 1) if not debug_flag else 2
 n_regression_chunks = config.get('n_regression_chunks', 40) if not debug_flag else 2
-n_avg_chunks = config.get('n_avg_chunks', 40)
+n_avg_chunks = config.get('n_avg_chunks', 1)
 n_trials = config['hyperparameter_optimization']['n_trials']
 n_bags = config['training']['n_bags'] if not debug_flag else 3
 n_repeats = config['n_repeats']

diff --git a/pipelines/cv_training/cv_training_association_testing.snakefile b/pipelines/cv_training/cv_training_association_testing.snakefile
@@ -14,7 +14,7 @@ burden_phenotype = phenotypes[0]
 
 n_burden_chunks = config.get("n_burden_chunks", 1) if not debug_flag else 2
 n_regression_chunks = config.get("n_regression_chunks", 40) if not debug_flag else 2
-n_avg_chunks = config.get('n_avg_chunks', 40)
+n_avg_chunks = config.get('n_avg_chunks', 1)
 n_trials = config["hyperparameter_optimization"]["n_trials"]
 n_bags = config["training"]["n_bags"] if not debug_flag else 3
 n_repeats = config["n_repeats"]

diff --git a/pipelines/training_association_testing.snakefile b/pipelines/training_association_testing.snakefile
@@ -9,7 +9,7 @@ training_phenotypes = config["training"].get("phenotypes", phenotypes)
 
 n_burden_chunks = config.get('n_burden_chunks', 1) if not debug_flag else 2
 n_regression_chunks = config.get('n_regression_chunks', 40) if not debug_flag else 2
-n_avg_chunks = config.get('n_avg_chunks', 40)
+n_avg_chunks = config.get('n_avg_chunks', 1)
 n_trials = config['hyperparameter_optimization']['n_trials']
 n_bags = config['training']['n_bags'] if not debug_flag else 3
 n_repeats = config['n_repeats']