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fixup! Format Python code with psf/black pull_request
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PMBio authored and PMBio committed Feb 26, 2024
1 parent 3b5b953 commit 1aec9e5
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions deeprvat/annotations/annotations.py
Original file line number Diff line number Diff line change
Expand Up @@ -561,7 +561,6 @@ def deepripe_encode_variant_bedline(bedline, genomefasta, flank_size=75):
return encoded_seqs



@click.group()
def cli():
pass
Expand Down Expand Up @@ -1072,7 +1071,6 @@ def aggregate_abscores(
all_absplice_scores.to_parquet(ab_splice_agg_score_file)



logging.basicConfig(
format="[%(asctime)s] %(levelname)s:%(name)s: %(message)s",
level="INFO",
Expand All @@ -1081,7 +1079,6 @@ def aggregate_abscores(
logger = logging.getLogger(__name__)



def deepripe_score_variant_onlyseq_all(
model_group, variant_bed, genomefasta, seq_len=200, batch_size=1024, n_jobs=32
):
Expand Down Expand Up @@ -1225,6 +1222,7 @@ def merge_abscores(

pd.options.mode.chained_assignment = None


@cli.command()
@click.argument("annotation_file", type=click.Path(exists=True))
@click.argument("deepripe_file", type=click.Path(exists=True))
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