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added test for absplice score aggregation
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Mück committed May 3, 2024
1 parent ef5ed41 commit 3138ca4
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38 changes: 37 additions & 1 deletion tests/annotations/test_annotations.py
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Original file line number Diff line number Diff line change
Expand Up @@ -288,4 +288,40 @@ def test_merge_deepsea_pcas(
written_results = pd.read_parquet(output_path)
expected_results = pd.read_parquet(expected_path)
assert written_results.shape == expected_results.shape
assert_frame_equal(written_results, expected_results[written_results.columns], check_exact = False)
assert_frame_equal(written_results, expected_results[written_results.columns], check_exact = False)


@pytest.mark.parametrize(
"test_data_name_dir, annotations, abSplice_score_dir, njobs, expected",
[
(
"aggregate_absplice_scores_small",
"vep_deepripe_deepsea.parquet",
"absplice_res_dir",
"8",
"abSplice_score_file.parquet",
),
]
)
def test_aggregate_abscores(
test_data_name_dir, annotations, abSplice_score_dir, njobs, expected, tmp_path
):
current_test_data_dir = tests_data_dir / 'aggregate_absplice_scores' / test_data_name_dir
annotations_path = current_test_data_dir / 'input' / annotations
abscore_path = current_test_data_dir / 'input' /abSplice_score_dir
expected_path = current_test_data_dir / 'expected' / expected
output_path = tmp_path / 'out.parquet'
cli_runner = CliRunner()
cli_parameters = [
'aggregate-abscores',
annotations_path.as_posix(),
abscore_path.as_posix(),
output_path.as_posix(),
njobs
]
result = cli_runner.invoke(annotations_cli, cli_parameters, catch_exceptions=False)
assert result.exit_code == 0
written_results = pd.read_parquet(output_path)
expected_results = pd.read_parquet(expected_path)
assert written_results.shape == expected_results.shape
assert_frame_equal(written_results, expected_results[written_results.columns], check_exact = False)
Binary file added ...gate_absplice_scores/aggregate_absplice_scores_small/expected/abSplice_score_file.parquet
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193 changes: 193 additions & 0 deletions ...lice_scores_small/input/absplice_res_dir/chr3test_variants_header.vcf.gz_AbSplice_DNA.csv
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@@ -0,0 +1,193 @@
variant,gene_id,tissue,delta_logit_psi,delta_psi,delta_score,splice_site_is_expressed,AbSplice_DNA
chr3:13336897:T>A,ENSG00000132182,Adrenal_Gland,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Pituitary,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Esophagus_Mucosa,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Kidney_Cortex,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Liver,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Lung,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Minor_Salivary_Gland,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Pancreas,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Prostate,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Cells_EBV_transformed_lymphocytes,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Small_Intestine_Terminal_Ileum,0.1271947632745491,0.0013409990441992,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Spleen,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Stomach,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Testis,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Thyroid,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Colon_Transverse,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Whole_Blood,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Brain_Cortex,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Brain_Nucleus_accumbens_basal_ganglia,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Brain_Hypothalamus,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Brain_Caudate_basal_ganglia,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Brain_Cerebellar_Hemisphere,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Brain_Cerebellum,-0.0987188615790356,-0.0010261192228098,0.0,1,0.002860864576028723
chr3:13336897:T>A,ENSG00000132182,Breast_Mammary_Tissue,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Vagina,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Uterus,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Artery_Aorta,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Artery_Coronary,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Artery_Tibial,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Brain_Amygdala,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Brain_Anterior_cingulate_cortex_BA24,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Skin_Sun_Exposed_Lower_leg,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Skin_Not_Sun_Exposed_Suprapubic,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Ovary,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Brain_Substantia_nigra,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Nerve_Tibial,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Muscle_Skeletal,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Brain_Frontal_Cortex_BA9,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Brain_Hippocampus,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Heart_Left_Ventricle,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Heart_Atrial_Appendage,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Adipose_Visceral_Omentum,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Brain_Putamen_basal_ganglia,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Esophagus_Gastroesophageal_Junction,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Brain_Spinal_cord_cervical_c_1,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Colon_Sigmoid,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Esophagus_Muscularis,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Adipose_Subcutaneous,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Adipose_Visceral_Omentum,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Pituitary,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Heart_Left_Ventricle,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Kidney_Cortex,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Liver,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Lung,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Minor_Salivary_Gland,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Muscle_Skeletal,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Nerve_Tibial,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Ovary,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Pancreas,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Prostate,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Esophagus_Muscularis,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Skin_Not_Sun_Exposed_Suprapubic,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Skin_Sun_Exposed_Lower_leg,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Small_Intestine_Terminal_Ileum,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Spleen,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Stomach,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Testis,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Thyroid,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Uterus,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Vagina,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Heart_Atrial_Appendage,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Esophagus_Mucosa,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Adrenal_Gland,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Frontal_Cortex_BA9,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Artery_Aorta,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Artery_Coronary,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Artery_Tibial,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Amygdala,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Anterior_cingulate_cortex_BA24,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Caudate_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Cerebellar_Hemisphere,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Cerebellum,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Cortex,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Hippocampus,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Esophagus_Gastroesophageal_Junction,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Hypothalamus,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Nucleus_accumbens_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Putamen_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Spinal_cord_cervical_c_1,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Brain_Substantia_nigra,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Breast_Mammary_Tissue,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Cells_EBV_transformed_lymphocytes,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Colon_Sigmoid,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Colon_Transverse,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Adipose_Subcutaneous,,,0.0,0,0.0005700424787606313
chr3:13336897:T>A,ENSG00000132182,Adipose_Subcutaneous,-0.0987188615790356,-0.0010261192228098,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Adipose_Visceral_Omentum,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Whole_Blood,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Heart_Atrial_Appendage,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Heart_Left_Ventricle,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Kidney_Cortex,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Liver,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Lung,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Minor_Salivary_Gland,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Muscle_Skeletal,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Nerve_Tibial,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Ovary,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Pancreas,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Pituitary,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Prostate,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Skin_Not_Sun_Exposed_Suprapubic,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Skin_Sun_Exposed_Lower_leg,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Small_Intestine_Terminal_Ileum,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Spleen,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Stomach,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Testis,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Thyroid,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Uterus,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Vagina,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Esophagus_Muscularis,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Esophagus_Mucosa,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Esophagus_Gastroesophageal_Junction,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Cortex,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Adrenal_Gland,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Artery_Aorta,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Artery_Coronary,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Artery_Tibial,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Amygdala,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Anterior_cingulate_cortex_BA24,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Caudate_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Cerebellar_Hemisphere,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Cerebellum,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Frontal_Cortex_BA9,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Colon_Transverse,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Hippocampus,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Hypothalamus,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Nucleus_accumbens_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Putamen_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Spinal_cord_cervical_c_1,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Brain_Substantia_nigra,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Breast_Mammary_Tissue,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Cells_EBV_transformed_lymphocytes,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Colon_Sigmoid,,,0.0,0,0.0005700424787606313
chr3:10151779:G>T,ENSG00000134086,Whole_Blood,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Adipose_Subcutaneous,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Adipose_Visceral_Omentum,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Pituitary,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Heart_Left_Ventricle,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Kidney_Cortex,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Liver,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Lung,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Minor_Salivary_Gland,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Muscle_Skeletal,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Nerve_Tibial,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Ovary,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Pancreas,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Prostate,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Esophagus_Muscularis,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Skin_Not_Sun_Exposed_Suprapubic,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Skin_Sun_Exposed_Lower_leg,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Small_Intestine_Terminal_Ileum,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Spleen,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Stomach,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Testis,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Thyroid,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Uterus,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Vagina,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Heart_Atrial_Appendage,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Esophagus_Mucosa,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Adrenal_Gland,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Frontal_Cortex_BA9,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Artery_Aorta,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Artery_Coronary,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Artery_Tibial,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Amygdala,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Anterior_cingulate_cortex_BA24,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Caudate_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Cerebellar_Hemisphere,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Cerebellum,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Cortex,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Hippocampus,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Esophagus_Gastroesophageal_Junction,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Hypothalamus,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Nucleus_accumbens_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Putamen_basal_ganglia,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Spinal_cord_cervical_c_1,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Brain_Substantia_nigra,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Breast_Mammary_Tissue,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Cells_EBV_transformed_lymphocytes,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Colon_Sigmoid,,,0.0,0,0.0005700424787606313
chr3:125013245:A>G,ENSG00000173706,Colon_Transverse,,,0.0,0,0.0005700424787606313
chr3:139349025:T>C,ENSG00000175110,Whole_Blood,,,0.0,0,0.0005700424787606313
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