Post run cmd in pipeline tests (#100)

* Add postrun_cmd * test post run * Update run-pipeline.yml * Update run-pipeline.yml * Update run-pipeline.yml * Update pipeline-tests.yml * Update pipeline-tests.yml * Remove samples
PMBio · May 24, 2024 · 39fab8d · 39fab8d
1 parent b7f8e36
commit 39fab8d
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/.github/workflows/run-pipeline.yml b/.github/workflows/run-pipeline.yml
@@ -34,6 +34,9 @@ on:
       fasta_download_path:
         required: false
         type: string
+      postrun_cmd:
+        required: false
+        type: string
 
 jobs:
   Run-Pipeline:
@@ -78,3 +81,7 @@ jobs:
             ${{ (endsWith(inputs.pipeline_config, 'ml') && '--configfile')  || '' }}  ${{ inputs.pipeline_config }} \
             --snakefile ${{inputs.pipeline_file}} --show-failed-logs -F
           shell: micromamba-shell {0}
+        - name: Run post pipeline cmd
+          if: inputs.postrun_cmd
+          run: ${{inputs.postrun_cmd}}
+          shell: micromamba-shell {0}