adapting conifg to work with tests

PMBio · Oct 11, 2023 · 758886c · 758886c
1 parent 5a18bf3
commit 758886c
Showing 1 changed file with 33 additions and 33 deletions.
diff --git a/deeprvat/seed_gene_discovery/config.yaml b/deeprvat/seed_gene_discovery/config.yaml
@@ -1,38 +1,38 @@
 phenotypes:
   - Apolipoprotein_A
-  - Apolipoprotein_B
-  - Calcium
-  - Cholesterol
-  - HDL_cholesterol
-  - IGF_1
-  - LDL_direct
-  - SHBG
-  - Total_bilirubin
-  - Triglycerides
-  - Urate
-  - Standing_height
-  - Lymphocyte_percentage
-  - Mean_platelet_thrombocyte_volume
-  - Mean_corpuscular_volume
-  - Mean_reticulocyte_volume
-  - Neutrophill_count
-  - Platelet_count
-  - Platelet_crit
-  - Platelet_distribution_width
-  - Red_blood_cell_erythrocyte_count
-  - Body_mass_index_BMI
-  - Glucose
-  - Vitamin_D
-  - Albumin
-  - Total_protein
-  - Cystatin_C
-  - Gamma_glutamyltransferase
-  - Alkaline_phosphatase
-  - Creatinine
-  - Whole_body_fat_free_mass 
-  - Forced_expiratory_volume_in_1_second_FEV1
-  - Glycated_haemoglobin_HbA1c
-  - WHR_Body_mass_index_BMI_corrected
+#   - Apolipoprotein_B
+#   - Calcium
+#   - Cholesterol
+#   - HDL_cholesterol
+#   - IGF_1
+#   - LDL_direct
+#   - SHBG
+#   - Total_bilirubin
+#   - Triglycerides
+#   - Urate
+#   - Standing_height
+#   - Lymphocyte_percentage
+#   - Mean_platelet_thrombocyte_volume
+#   - Mean_corpuscular_volume
+#   - Mean_reticulocyte_volume
+#   - Neutrophill_count
+#   - Platelet_count
+#   - Platelet_crit
+#   - Platelet_distribution_width
+#   - Red_blood_cell_erythrocyte_count
+#   - Body_mass_index_BMI
+#   - Glucose
+#   - Vitamin_D
+#   - Albumin
+#   - Total_protein
+#   - Cystatin_C
+#   - Gamma_glutamyltransferase
+#   - Alkaline_phosphatase
+#   - Creatinine
+#   - Whole_body_fat_free_mass 
+#   - Forced_expiratory_volume_in_1_second_FEV1
+#   - Glycated_haemoglobin_HbA1c
+#   - WHR_Body_mass_index_BMI_corrected
 
 variant_types:
     - missense