From 758886cdbafa038e8db92a9b4a91ebbe08c71301 Mon Sep 17 00:00:00 2001 From: Eva Holtkamp Date: Wed, 11 Oct 2023 09:42:22 +0200 Subject: [PATCH] adapting conifg to work with tests --- deeprvat/seed_gene_discovery/config.yaml | 66 ++++++++++++------------ 1 file changed, 33 insertions(+), 33 deletions(-) diff --git a/deeprvat/seed_gene_discovery/config.yaml b/deeprvat/seed_gene_discovery/config.yaml index dc43da22..f4a5eba0 100644 --- a/deeprvat/seed_gene_discovery/config.yaml +++ b/deeprvat/seed_gene_discovery/config.yaml @@ -1,38 +1,38 @@ phenotypes: - Apolipoprotein_A - - Apolipoprotein_B - - Calcium - - Cholesterol - - HDL_cholesterol - - IGF_1 - - LDL_direct - - SHBG - - Total_bilirubin - - Triglycerides - - Urate - - Standing_height - - Lymphocyte_percentage - - Mean_platelet_thrombocyte_volume - - Mean_corpuscular_volume - - Mean_reticulocyte_volume - - Neutrophill_count - - Platelet_count - - Platelet_crit - - Platelet_distribution_width - - Red_blood_cell_erythrocyte_count - - Body_mass_index_BMI - - Glucose - - Vitamin_D - - Albumin - - Total_protein - - Cystatin_C - - Gamma_glutamyltransferase - - Alkaline_phosphatase - - Creatinine - - Whole_body_fat_free_mass - - Forced_expiratory_volume_in_1_second_FEV1 - - Glycated_haemoglobin_HbA1c - - WHR_Body_mass_index_BMI_corrected +# - Apolipoprotein_B +# - Calcium +# - Cholesterol +# - HDL_cholesterol +# - IGF_1 +# - LDL_direct +# - SHBG +# - Total_bilirubin +# - Triglycerides +# - Urate +# - Standing_height +# - Lymphocyte_percentage +# - Mean_platelet_thrombocyte_volume +# - Mean_corpuscular_volume +# - Mean_reticulocyte_volume +# - Neutrophill_count +# - Platelet_count +# - Platelet_crit +# - Platelet_distribution_width +# - Red_blood_cell_erythrocyte_count +# - Body_mass_index_BMI +# - Glucose +# - Vitamin_D +# - Albumin +# - Total_protein +# - Cystatin_C +# - Gamma_glutamyltransferase +# - Alkaline_phosphatase +# - Creatinine +# - Whole_body_fat_free_mass +# - Forced_expiratory_volume_in_1_second_FEV1 +# - Glycated_haemoglobin_HbA1c +# - WHR_Body_mass_index_BMI_corrected variant_types: - missense