From 835b7b7fc7aed992fbaa0d697f39827564bd5ca8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C3=BCck?= Date: Thu, 16 May 2024 15:56:12 +0200 Subject: [PATCH] added test that actually contains plof row --- tests/annotations/test_annotations.py | 6 ++ .../expected/expected.parquet | Bin 0 -> 29370 bytes .../annotation_colnames_filling_values.yaml | 65 ++++++++++++++++++ .../input/annotations.parquet | Bin 0 -> 31387 bytes 4 files changed, 71 insertions(+) create mode 100644 tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/expected/expected.parquet create mode 100644 tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/input/annotation_colnames_filling_values.yaml create mode 100644 tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/input/annotations.parquet diff --git a/tests/annotations/test_annotations.py b/tests/annotations/test_annotations.py index 8da3bdc2..6dbd96e3 100644 --- a/tests/annotations/test_annotations.py +++ b/tests/annotations/test_annotations.py @@ -629,6 +629,12 @@ def test_filter_by_exon_distance( "annotations.parquet", "expected.parquet", ), + ( + "select_rename_fill_columns_plof2", + "annotation_colnames_filling_values.yaml", + "annotations.parquet", + "expected.parquet", + ), ], ) def test_select_rename_fill_annotations( diff --git a/tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/expected/expected.parquet b/tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/expected/expected.parquet new file mode 100644 index 0000000000000000000000000000000000000000..2d4082cc86d431a553ad0fc71df561c4cb66d526 GIT binary patch literal 29370 zcmd5l4SZA8^+_o-AYg%}7DOopo=i%cq#rbjCNF7|CbXeR+k7F5`E1j^q@hXE4@6Oz zFm?WzW0U`W%&D8`&@lzalsOW0IHsZ-!>EuY2yf=bm!|Ex1K4&6jQwOYaspNoPt$Gex3Ck!YIulgRdwqU(Vbl%=f5>6arg&kyLJt%PW zX|o7Bnm1QEWp+)WXwvMG%j^CAh$R^DyCOti)YYspHOXBOcdwTSMx=Sg<;92dijU-B 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a/tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/input/annotation_colnames_filling_values.yaml b/tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/input/annotation_colnames_filling_values.yaml new file mode 100644 index 00000000..b18e0473 --- /dev/null +++ b/tests/annotations/test_data/select_rename_fill_columns/select_rename_fill_columns_plof2/input/annotation_colnames_filling_values.yaml @@ -0,0 +1,65 @@ +annotation_column_names: + 'af' : + 'combined_UKB_NFE_AF' : 0 + 'maf_mb' : + 'combined_UKB_NFE_AF_MB' : 10000 + 'maf' : + 'combined_UKB_NFE_MAF' : 0 + 'PolyPhen' : + 'polyphen_score' : 0 + 'SIFT' : + 'sift_score' : 1 + 'QKI_hg2' : + 'DeepRipe_plus_QKI_lip_hg2' : 0 + 'QKI_k5' : + 'DeepRipe_plus_QKI_clip_k5' : 0 + 'KHDRBS1_k5' : + 'DeepRipe_plus_KHDRBS1_clip_k5' : 0 + 'ELAVL1_parclip' : + 'DeepRipe_plus_ELAVL1_parclip' : 0 + 'TARDBP_parclip' : + 'DeepRipe_plus_TARDBP_parclip' : 0 + 'HNRNPD_parclip' : + 'DeepRipe_plus_HNRNPD_parclip' : 0 + 'MBNL1_parclip' : + 'DeepRipe_plus_MBNL1_parclip' : 0 + 'QKI_parclip' : + 'DeepRipe_plus_QKI_parclip' : 0 + 'Consequence_splice_acceptor_variant' : + 'Consequence_splice_acceptor_variant' : 0 + 'Consequence_splice_donor_variant' : + 'Consequence_splice_donor_variant' : 0 + 'Consequence_stop_gained' : + 'Consequence_stop_gained' : 0 + 'Consequence_frameshift_variant' : + 'Consequence_frameshift_variant' : 0 + 'Consequence_stop_lost' : + 'Consequence_stop_lost' : 0 + 'Consequence_start_lost' : + 'Consequence_start_lost' : 0 + 'Consequence_inframe_insertion' : + 'Consequence_inframe_insertion' : 0 + 'Consequence_inframe_deletion' : + 'Consequence_inframe_deletion' : 0 + 'Consequence_missense_variant' : + 'Consequence_missense_variant' : 0 + 'Consequence_protein_altering_variant' : + 'Consequence_protein_altering_variant' : 0 + 'Consequence_splice_region_variant' : + 'Consequence_splice_region_variant' : 0 + 'DeepSEA_PC_1' : + 'DeepSEA_PC_1' : 0 + 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