fix conditing window size (was 500kb not 500) (#110)

* fix conditing window size (was 500kb not 500)

* bugfix doc link path

* bugfix docs config link

* merge latest from main

---------

Co-authored-by: Kayla Meyer <meyer.kmt@gmail.com>
Co-authored-by: Brian Clarke <9725212+bfclarke@users.noreply.github.com>
Co-authored-by: Brian Clarke <brian.clarke@dkfz.de>

pipelines/association_testing_control_for_common_variants.snakefile

@@ -86,7 +86,7 @@ phecode_dict = {'Apolipoprotein_A': 30630,
 
 gtf_file = 'gencode.v34lift37.annotation.gtf.gz'
 genotype_base_dir = 'genotypes/'
-padding = 500
+padding = 500000
 
 burden_phenotype = phenotypes[0]