From 87d5f41f7f23eafa6281cef78c01d90bd807ce26 Mon Sep 17 00:00:00 2001 From: Eva Holtkamp <59055511+HolEv@users.noreply.github.com> Date: Mon, 14 Oct 2024 17:05:51 +0200 Subject: [PATCH] fix conditing window size (was 500kb not 500) (#110) * fix conditing window size (was 500kb not 500) * bugfix doc link path * bugfix docs config link * merge latest from main --------- Co-authored-by: Kayla Meyer Co-authored-by: Brian Clarke <9725212+bfclarke@users.noreply.github.com> Co-authored-by: Brian Clarke --- .../association_testing_control_for_common_variants.snakefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pipelines/association_testing_control_for_common_variants.snakefile b/pipelines/association_testing_control_for_common_variants.snakefile index 2933550c..07fbdee5 100644 --- a/pipelines/association_testing_control_for_common_variants.snakefile +++ b/pipelines/association_testing_control_for_common_variants.snakefile @@ -86,7 +86,7 @@ phecode_dict = {'Apolipoprotein_A': 30630, gtf_file = 'gencode.v34lift37.annotation.gtf.gz' genotype_base_dir = 'genotypes/' -padding = 500 +padding = 500000 burden_phenotype = phenotypes[0]