add -p flag (#106)

PMBio · May 29, 2024 · 901ff97 · 901ff97
1 parent db48374
commit 901ff97
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/run-pipeline.yml b/.github/workflows/run-pipeline.yml
@@ -82,7 +82,7 @@ jobs:
             python -m snakemake ${{ (inputs.dry_run && '-n') || '' }} \
             -j 2 --directory ${{inputs.pipeline_directory}} \
             ${{ (endsWith(inputs.pipeline_config, 'ml') && '--configfile')  || '' }}  ${{ inputs.pipeline_config }} \
-            --snakefile ${{inputs.pipeline_file}} --show-failed-logs -F ${{ inputs.pipeline_extra_flags }}
+            --snakefile ${{inputs.pipeline_file}} --show-failed-logs -F -p ${{ inputs.pipeline_extra_flags }}
           shell: micromamba-shell {0}
         - name: Run post pipeline cmd
           if: inputs.postrun_cmd