reverted to named environment

PMBio · May 13, 2024 · 95fb93c · 95fb93c
1 parent 54f9991
commit 95fb93c
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/pipelines/resources/absplice_splicing_pred_DNA.snakefile b/pipelines/resources/absplice_splicing_pred_DNA.snakefile
@@ -34,7 +34,7 @@ rule mmsplice_splicemap:
         mem_mb = 30_000,
         threads = 4
     conda: 
-        "./absplice.yaml"
+        "absplice"
     output:
         result = Path(absplice_output_dir)/ config_pred['splicing_pred']['mmsplice_splicemap']
     script:
@@ -104,7 +104,7 @@ else:
         output:
             spliceai_csv = Path(absplice_output_dir) / config_pred['splicing_pred']['spliceai'],
         conda:
-            "./absplice.yaml"
+            "absplice"
         run:
             from absplice.utils import read_spliceai_vcf
             df = read_spliceai_vcf(input.spliceai_vcf)
@@ -119,7 +119,7 @@ rule absplice_dna:
     params:
         extra_info = absplice_main_conf['extra_info_dna']
     conda:
-        "./absplice.yaml"
+        "absplice"
     output:
         absplice_dna = absplice_output_dir / '{genome}' / 'dna' / '{vcf_id}_AbSplice_DNA.csv'
     script: