From 95fb93c88eb0c74204721211d69482cc4b18618a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marcel=20M=C3=BCck?= Date: Mon, 13 May 2024 11:00:07 +0200 Subject: [PATCH] reverted to named environment --- pipelines/resources/absplice_splicing_pred_DNA.snakefile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/pipelines/resources/absplice_splicing_pred_DNA.snakefile b/pipelines/resources/absplice_splicing_pred_DNA.snakefile index afacd8e8..f65bcdd5 100644 --- a/pipelines/resources/absplice_splicing_pred_DNA.snakefile +++ b/pipelines/resources/absplice_splicing_pred_DNA.snakefile @@ -34,7 +34,7 @@ rule mmsplice_splicemap: mem_mb = 30_000, threads = 4 conda: - "./absplice.yaml" + "absplice" output: result = Path(absplice_output_dir)/ config_pred['splicing_pred']['mmsplice_splicemap'] script: @@ -104,7 +104,7 @@ else: output: spliceai_csv = Path(absplice_output_dir) / config_pred['splicing_pred']['spliceai'], conda: - "./absplice.yaml" + "absplice" run: from absplice.utils import read_spliceai_vcf df = read_spliceai_vcf(input.spliceai_vcf) @@ -119,7 +119,7 @@ rule absplice_dna: params: extra_info = absplice_main_conf['extra_info_dna'] conda: - "./absplice.yaml" + "absplice" output: absplice_dna = absplice_output_dir / '{genome}' / 'dna' / '{vcf_id}_AbSplice_DNA.csv' script: