From 743544f44436e13af77e8eba385f487737bc7b3b Mon Sep 17 00:00:00 2001 From: PMBio Date: Thu, 12 Oct 2023 14:52:17 +0000 Subject: [PATCH] fixup! Format Python code with psf/black pull_request --- deeprvat/seed_gene_discovery/seed_gene_discovery.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/deeprvat/seed_gene_discovery/seed_gene_discovery.py b/deeprvat/seed_gene_discovery/seed_gene_discovery.py index 933c3577..bd9c6781 100644 --- a/deeprvat/seed_gene_discovery/seed_gene_discovery.py +++ b/deeprvat/seed_gene_discovery/seed_gene_discovery.py @@ -273,11 +273,10 @@ def test_gene( var_weight_function = test_config.get("var_weight_function", "sift_polyphen") max_n_markers = test_config.get("max_n_markers", 5000) - #skips genes with more than max_n_markers qualifying variants + # skips genes with more than max_n_markers qualifying variants logger.info(f"Using function {var_weight_function} for variant weighting") - ( weights, _, @@ -479,7 +478,7 @@ def update_config( config["data"]["dataset_config"][ "sim_phenotype_file" ] = simulated_phenotype_file - logger.info(f'Reading MAF column from column {maf_column}') + logger.info(f"Reading MAF column from column {maf_column}") if phenotype is not None: config["data"]["dataset_config"]["y_phenotypes"] = [phenotype]