From ae950cc51ab8afea3cfc9a09c430761f4590bf90 Mon Sep 17 00:00:00 2001
From: Magnus Wahlberg <endast@gmail.com>
Date: Wed, 11 Oct 2023 09:54:50 +0200
Subject: [PATCH] Update ensembl-vep version

---
 deeprvat/annotations/setup_annotation_workflow.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/deeprvat/annotations/setup_annotation_workflow.sh b/deeprvat/annotations/setup_annotation_workflow.sh
index 08b80726..76ba0d13 100644
--- a/deeprvat/annotations/setup_annotation_workflow.sh
+++ b/deeprvat/annotations/setup_annotation_workflow.sh
@@ -9,7 +9,7 @@ echo "- vep"
 mkdir -p $REPO_DIR/ensembl-vep
 git clone https://github.com/Ensembl/ensembl-vep.git $REPO_DIR/ensembl-vep 
 cd $REPO_DIR/ensembl-vep
-git checkout release/109
+git checkout release/111
 perl INSTALL.pl --AUTO acfp --ASSEMBLY GRCh38 --CACHEDIR $VEP_CACHEDIR --PLUGINS CADD, SpliceAI, PrimateAI --PLUGINSDIR $VEP_PLUGINDIR --species homo_sapiens
 cd ../..