Fix extract variants

PMBio · Oct 19, 2023 · b4ac7ca · b4ac7ca
1 parent bb612b3
commit b4ac7ca
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pipelines/annotations.snakefile b/pipelines/annotations.snakefile
@@ -473,7 +473,7 @@ rule strip_chr_name:
 
 rule extract_variants:
     input:
-        source_variant_dir / (source_variant_file_pattern + ".bcf"),
+        source_variant_dir / (source_variant_file_pattern + f".{config['source_variant_file_type']}"),
     output:
         anno_tmp_dir / (source_variant_file_pattern + "_variants.vcf"),
     shell: