cleanup

PMBio · Oct 19, 2023 · bac5dc1 · bac5dc1
1 parent dced52f
commit bac5dc1
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diff --git a/.github/workflows/github-actions.yml b/.github/workflows/github-actions.yml
@@ -15,4 +15,4 @@ jobs:
           directory: 'example/annotations'
           snakefile: 'pipelines/annotations.snakefile'
           args: '-j 2 -n --configfile pipelines/config/deeprvat_annotation_config.yaml'
-          stagein: 'mkdir -pv preprocessing_workdir/norm/variants/; mkdir -pv output_dir/annotations; touch preprocessing_workdir/norm/variants/variants.tsv.gz'
+          stagein: 'mkdir -pv preprocessing_workdir/norm/variants/; mkdir -pv reference; touch reference/hg38.fa; touch preprocessing_workdir/norm/variants/variants.tsv.gz'
diff --git a/example/annotations/preprocessing_workdir/norm/variants/variants.tsv.gz b/example/annotations/preprocessing_workdir/norm/variants/variants.tsv.gz
diff --git a/example/annotations/reference/hg38.fa b/example/annotations/reference/hg38.fa