From bac5dc1a9a4adb52b368f35bfbf98d518265ea3d Mon Sep 17 00:00:00 2001 From: Magnus Wahlberg Date: Thu, 19 Oct 2023 10:54:07 +0200 Subject: [PATCH] cleanup --- .github/workflows/github-actions.yml | 2 +- .../preprocessing_workdir/norm/variants/variants.tsv.gz | 0 example/annotations/reference/hg38.fa | 0 3 files changed, 1 insertion(+), 1 deletion(-) delete mode 100644 example/annotations/preprocessing_workdir/norm/variants/variants.tsv.gz delete mode 100644 example/annotations/reference/hg38.fa diff --git a/.github/workflows/github-actions.yml b/.github/workflows/github-actions.yml index 3f27a133..76cfe40e 100644 --- a/.github/workflows/github-actions.yml +++ b/.github/workflows/github-actions.yml @@ -15,4 +15,4 @@ jobs: directory: 'example/annotations' snakefile: 'pipelines/annotations.snakefile' args: '-j 2 -n --configfile pipelines/config/deeprvat_annotation_config.yaml' - stagein: 'mkdir -pv preprocessing_workdir/norm/variants/; mkdir -pv output_dir/annotations; touch preprocessing_workdir/norm/variants/variants.tsv.gz' + stagein: 'mkdir -pv preprocessing_workdir/norm/variants/; mkdir -pv reference; touch reference/hg38.fa; touch preprocessing_workdir/norm/variants/variants.tsv.gz' diff --git a/example/annotations/preprocessing_workdir/norm/variants/variants.tsv.gz b/example/annotations/preprocessing_workdir/norm/variants/variants.tsv.gz deleted file mode 100644 index e69de29b..00000000 diff --git a/example/annotations/reference/hg38.fa b/example/annotations/reference/hg38.fa deleted file mode 100644 index e69de29b..00000000