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endast committed Oct 20, 2023
1 parent 82e154d commit be45635
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3 changes: 0 additions & 3 deletions pipelines/annotations.snakefile
Original file line number Diff line number Diff line change
Expand Up @@ -481,9 +481,6 @@ rule extract_with_header:
)


# load_bfc + """ bcftools query -f '%CHROM\\t%POS\\t%ID\\t%REF\\t%ALT\\t%QUAL\\t%FILTER\\n' --print-header {input} > {output}"""


rule strip_chr_name:
input:
anno_tmp_dir / (source_variant_file_pattern + "_variants.vcf"),
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