diff --git a/pipelines/annotations.snakefile b/pipelines/annotations.snakefile index d54a8e02..794809a9 100644 --- a/pipelines/annotations.snakefile +++ b/pipelines/annotations.snakefile @@ -481,9 +481,6 @@ rule extract_with_header: ) -# load_bfc + """ bcftools query -f '%CHROM\\t%POS\\t%ID\\t%REF\\t%ALT\\t%QUAL\\t%FILTER\\n' --print-header {input} > {output}""" - - rule strip_chr_name: input: anno_tmp_dir / (source_variant_file_pattern + "_variants.vcf"),