cast - as na in vep files

PMBio · Oct 17, 2023 · c4b452c · c4b452c
1 parent c9bb44b
commit c4b452c
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/deeprvat/annotations/annotations.py b/deeprvat/annotations/annotations.py
@@ -1046,6 +1046,7 @@ def merge_annotations(vep_header_line:int,
                 vep_file,
                 header=vep_header_line,
                 sep="\t",
+                na_values = "-"
             )
     vep_df = process_vep(vep_file=vep_df)
     logger.info(f"vep_df shape is {vep_df.shape}")