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Fix path to pipeline
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endast committed May 16, 2024
1 parent 534b392 commit df6a0f3
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2 changes: 1 addition & 1 deletion .github/workflows/github-actions.yml
Original file line number Diff line number Diff line change
Expand Up @@ -97,7 +97,7 @@ jobs:
- name: Smoke test association_testing_pretrained_regenie pipeline
run: |
python -m snakemake -n -j 2 --directory ${{ github.workspace }}/example \
--snakefile ${{ github.workspace }}/pipelines/association_testing_pretrained_regenie.snakefile --show-failed-logs -F
--snakefile ${{ github.workspace }}/pipelines/training_association_testing_regenie.snakefile --show-failed-logs -F
shell: micromamba-shell {0}

Smoke-Seed-Gene-Discovery:
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