diff --git a/deeprvat/data/dense_gt.py b/deeprvat/data/dense_gt.py
index d437e251..cf358d73 100644
--- a/deeprvat/data/dense_gt.py
+++ b/deeprvat/data/dense_gt.py
@@ -417,7 +417,7 @@ def transform_data(self):
         else:
             n_unique_y_val = 0
         if n_unique_y_val == 2:
-            logger.info(
+            logger.warning(
                 "Not applying y transformation because y only has two values and seems to be binary"
             )
             self.y_transformation = None
@@ -437,7 +437,7 @@ def transform_data(self):
             else:
                 raise ValueError(f"Unknown y_transformation: {self.y_transformation}")
         else:
-            logger.info("Not tranforming phenotype")
+            logger.warning("Not tranforming phenotype")
 
     def setup_annotations(
         self,