fixup! Format Python code with psf/black pull_request

PMBio · Dec 6, 2023 · f346596 · f346596
1 parent 4f0b640
commit f346596
Showing 1 changed file with 11 additions and 7 deletions.
diff --git a/deeprvat/preprocessing/preprocess.py b/deeprvat/preprocessing/preprocess.py
@@ -299,16 +299,20 @@ def process_sparse_gt(
 
         logging.info(f"sparse gt chrom(es) are: {sparse_gt_chrom}")
 
-#        processed = Parallel(n_jobs=threads, verbose=50)(
-#            delayed(process_sparse_gt_file)(
-#                f.as_posix(), variants_chrom, samples, calls_to_exclude
-#            )
-#            for f in sparse_gt_chrom
-#        )
+        #        processed = Parallel(n_jobs=threads, verbose=50)(
+        #            delayed(process_sparse_gt_file)(
+        #                f.as_posix(), variants_chrom, samples, calls_to_exclude
+        #            )
+        #            for f in sparse_gt_chrom
+        #        )
 
         processed = []
         for f in sparse_gt_chrom:
-            processed.append(process_sparse_gt_file(f.as_posix(), variants_chrom, samples, calls_to_exclude))
+            processed.append(
+                process_sparse_gt_file(
+                    f.as_posix(), variants_chrom, samples, calls_to_exclude
+                )
+            )
 
         postprocessed_gt = postprocess_sparse_gt(processed, 1, len(samples))
         postprocessed_variants = postprocess_sparse_gt(processed, 0, len(samples))