Remoce joblib temporary

PMBio · Dec 6, 2023 · f3cba5d · f3cba5d
1 parent 93fa488
commit f3cba5d
Showing 1 changed file with 12 additions and 5 deletions.
diff --git a/deeprvat/preprocessing/preprocess.py b/deeprvat/preprocessing/preprocess.py
@@ -299,12 +299,19 @@ def process_sparse_gt(
 
         logging.info(f"sparse gt chrom(es) are: {sparse_gt_chrom}")
 
-        processed = Parallel(n_jobs=threads, verbose=50)(
-            delayed(process_sparse_gt_file)(
-                f.as_posix(), variants_chrom, samples, calls_to_exclude
+        #        processed = Parallel(n_jobs=threads, verbose=50)(
+        #            delayed(process_sparse_gt_file)(
+        #                f.as_posix(), variants_chrom, samples, calls_to_exclude
+        #            )
+        #            for f in sparse_gt_chrom
+        #        )
+        processed = []
+        for f in sparse_gt_chrom:
+            processed.append(
+                process_sparse_gt_file(
+                    f.as_posix(), variants_chrom, samples, calls_to_exclude
+                )
             )
-            for f in sparse_gt_chrom
-        )
 
         postprocessed_gt = postprocess_sparse_gt(processed, 1, len(samples))
         postprocessed_variants = postprocess_sparse_gt(processed, 0, len(samples))