diff --git a/pipelines/annotations.snakefile b/pipelines/annotations.snakefile index 83beca76..4c39c956 100644 --- a/pipelines/annotations.snakefile +++ b/pipelines/annotations.snakefile @@ -278,7 +278,7 @@ rule deepSea_PCA: "python", f"{annotation_python_file}", "deepsea-pca", - "--n-components 10", # TODO read from config? + "--n-components 100", "{input}", str(anno_dir / "deepSea_pca"/ "pca_matrix"), str(anno_dir / "deepSea_pca"),